DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox15 and sox13

DIOPT Version :10

Sequence 1:NP_523739.2 Gene:Sox15 / 36575 FlyBaseID:FBgn0005613 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_001429657.1 Gene:sox13 / 555983 ZFINID:ZDB-GENE-100519-1 Length:628 Species:Danio rerio


Alignment Length:478 Identity:112/478 - (23%)
Similarity:176/478 - (36%) Gaps:182/478 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 EHPHHLLTNYNSKKYPHVSRTPEYSHSTGSDYPEHGGYLTDGRLMHESNSDAGIYHVRQGSEH-- 70
            |:|..||.|      ||  .|| ...|:|:.|                         ||.:..  
Zfish   288 EYPMQLLPN------PH--STP-IKRSSGTVY-------------------------RQDTSQPL 318

  Fly    71 ---SSPSLHSP-----AIQSSGYENEHLNEAVLAAHSHSHSPMPMVSSAYVGGGTASGSLINSNI 127
               :.|...||     |...|||.:..|.::         .|...:|.:::|.|......|:...
Zfish   319 NLTAKPKTPSPQALELAHLQSGYRHRDLPQS---------PPRSALSLSFLGEGDVVTQAIHDAQ 374

  Fly   128 PLLGGGGNSVLNKFLSHPHAGMVGGGTGQMEDCTSHSPIEAA-------------SMWSYDYKGD 179
            .||.||                 .|.||:..|  :::.:||:             ...|.|.:|.
Zfish   375 QLLRGG-----------------QGSTGRERD--NNTRLEASRDRMDDGHSRTNEDHHSSDSEGQ 420

  Fly   180 LCAPNCGYLERHKPLPADLKYRPGGTQSKSAKESRIRRPMNAFMVWAKIERKKLADENPDLHNAD 244
            :.....|..                .:|::.....|:|||||||||||.||:::....||:||:.
Zfish   421 MAISGVGSF----------------GESRTPSSGHIKRPMNAFMVWAKDERRRILQAFPDMHNSS 469

  Fly   245 LSKMLGKKWRSLTPQDRRPYVEEAERLRVIHMTEHPNYKYRP----------RRRKQSKLRAMQP 299
            :||:||.:|:|::.|:::||.||..||...|:..:|:|||:|          ||.:..:.:||..
Zfish   470 ISKILGSRWKSMSNQEKQPYYEEQARLSRQHLERYPDYKYKPRPKRTCIVEGRRLRVGEYKAMMK 534

  Fly   300 GGKEQSESSPNPGTGGSKSNPKLATPPLATASSSY-TTPTDESTCNSTNQNHGQSTPGGLYEQPL 363
            ..:::...|..|    |:|..:|..||   :...| |||...||.                  ||
Zfish   535 SRRQEQRVSYPP----SQSEQQLPYPP---SEGQYPTTPVSMSTL------------------PL 574

  Fly   364 KPTYSPSSVDCYSNADSTEQIESLAANCPPALLNESSPTGGGYDNSLLLKKLTKPSPSRAAKSRQ 428
            .                            ||||....|.|            .:|...|.:::|:
Zfish   575 H----------------------------PALLEHYLPRG------------LEPPQGRVSETRE 599

  Fly   429 -----EKLAKSEEKNKGSQSQGQ 446
                 :..::.||.:.|.:|:|:
Zfish   600 SARPRQPYSEGEESDAGERSEGE 622

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox15NP_523739.2 HMG-box_SoxF 214..289 CDD:438841 38/84 (45%)
PHA03273 305..>391 CDD:223031 15/86 (17%)
sox13NP_001429657.1 None

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