DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sox15 and LOC4577482

DIOPT Version :10

Sequence 1:NP_523739.2 Gene:Sox15 / 36575 FlyBaseID:FBgn0005613 Length:784 Species:Drosophila melanogaster
Sequence 2:XP_001238271.1 Gene:LOC4577482 / 4577482 VectorBaseID:AGAMI1_010672 Length:111 Species:Anopheles gambiae


Alignment Length:107 Identity:24/107 - (22%)
Similarity:47/107 - (43%) Gaps:22/107 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 RRPMNAFMVWAKIERKKLADENPDLHNADLSKMLGKKWRSLTPQDRRPYVEEAERLRVIHMTEHP 280
            :||::|:|:|....|:::..|||.:...:::|..|:.||.                    |.:..
Mosquito     6 KRPLSAYMLWLNSAREQIKKENPGIKVTEIAKKGGELWRG--------------------MKDKS 50

  Fly   281 NYKYRPRRRKQSKLRAMQPGGKEQSESSPNPGTGGSKSNPKL 322
            .::|:..:.|....:.||  ..|::..|.:.||...|...|:
Mosquito    51 EWEYKAAKMKDEYNKQMQ--DFERNGGSKDAGTKKKKGAKKV 90

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox15NP_523739.2 HMG-box_SoxF 214..289 CDD:438841 15/72 (21%)
PHA03273 305..>391 CDD:223031 5/18 (28%)
LOC4577482XP_001238271.1 HMG-box_SSRP1-like 7..71 CDD:438810 18/85 (21%)

Return to query results.
Submit another query.