DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox15 and sox17b.1

DIOPT Version :9

Sequence 1:NP_523739.2 Gene:Sox15 / 36575 FlyBaseID:FBgn0005613 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_988849.1 Gene:sox17b.1 / 394440 XenbaseID:XB-GENE-484865 Length:376 Species:Xenopus tropicalis


Alignment Length:480 Identity:130/480 - (27%)
Similarity:185/480 - (38%) Gaps:151/480 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   184 NC------GYLERHKPL----PADLKYRPGGTQSKSAKESRIRRPMNAFMVWAKIERKKLADENP 238
            ||      |..|...||    .|..|...|...|:...|:||||||||||||||.|||:||.:||
 Frog    17 NCSVPIMMGQYEWTDPLTMFQDAKTKKEAGSANSRGKAEARIRRPMNAFMVWAKDERKRLAQQNP 81

  Fly   239 DLHNADLSKMLGKKWRSLTPQDRRPYVEEAERLRVIHMTEHPNYKYRPRRRKQSKLRAMQPGGKE 303
            |||||:|||||||.|:|||...:||:|||||||||.|:.::|:|||||||:||.|....:..|..
 Frog    82 DLHNAELSKMLGKSWKSLTLASKRPFVEEAERLRVQHIQDYPDYKYRPRRKKQVKRMKREEEGFL 146

  Fly   304 QSESSPNPGTGGSKSNPKLATPPLATASSSYTTPTDESTCNSTNQNHGQSTPGGLYE--QPLKPT 366
            .|...|.|...|..          |....:|     :...:..|....|.||.|.:|  .|:...
 Frog   147 PSADIPGPQVMGCN----------AMVGQNY-----KMQYSGQNSQQSQITPAGYFEDHNPVGYY 196

  Fly   367 YSPSSVDCYSNADSTEQIESLAANCPPALLNESSPTGGGYDNSLL--LKKLTKPSPSRAAKSRQE 429
            |...:|..|..:.::      :..|.|....|.......:::|.:  .:..:.|:..:....::.
 Frog   197 YRGYNVPEYYMSQNS------SVTCGPPAQGEYQALSYNFNSSYIPYQQNASAPAMGKQMAVKEN 255

  Fly   430 KLAKSEEKN-KGSQSQGQSQQG-IY----AATYPLAPTSVAVVAARGMYVTCNNRGLLDHGHSVK 488
            .:.:|.|.. .|.|...|...| :|    |.|:|:|.|.                   .|     
 Frog   256 IIQESPEHGIMGCQVSPQMYNGQMYVPECAKTHPVAQTE-------------------QH----- 296

  Fly   489 GTFYPPVSVSEDDNSTSMRNSISALQQHCNVVTSTPSSSGGTMPTSEMSSYTVSMADNCGNLRLS 553
                                  |:|.|...:||               .:|..|..|  |:|...
 Frog   297 ----------------------SSLHQSQQMVT---------------QNYLPSQQD--GHLESD 322

  Fly   554 MNELSGNEYLPSANAYGMQYEDFLRYQSNDMDYSTSAVEHKETTSDSASGQKCLKYPDTNQNYD- 617
            :::              .:::.:|.|:...                           ||...|. 
 Frog   323 IDK--------------TEFDQYLMYEPKS---------------------------DTELIYTI 346

  Fly   618 DYEAEAYSNAMLP-----ATAASYY 637
            |.::.|||..:||     |.:..||
 Frog   347 DQDSGAYSTNLLPSLISEANSVCYY 371

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox15NP_523739.2 SOX-TCF_HMG-box 214..285 CDD:238684 52/70 (74%)
sox17b.1NP_988849.1 SOX-TCF_HMG-box 57..128 CDD:238684 52/70 (74%)
PABP-1234 <80..250 CDD:130689 63/190 (33%)
Required for transcriptional activity and interaction with ctnnb1. /evidence=ECO:0000250|UniProtKB:O42601 327..331 0/3 (0%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 116 1.000 Domainoid score I5873
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 1 1.000 - - otm47877
Panther 1 1.100 - - O PTHR10270
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R685
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.040

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