DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox15 and sox4b

DIOPT Version :9

Sequence 1:NP_523739.2 Gene:Sox15 / 36575 FlyBaseID:FBgn0005613 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_957195.1 Gene:sox4b / 393875 ZFINID:ZDB-GENE-040426-1274 Length:342 Species:Danio rerio


Alignment Length:306 Identity:90/306 - (29%)
Similarity:143/306 - (46%) Gaps:76/306 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 IEAASMWSYDYKGDLCAPNCGYLERHKPLPADLKYRPGGTQSKSAK---------ESRIRRPMNA 221
            ::.:|..|..:.||........|:.|...|:     ||.|.|...|         ...|:|||||
Zfish     2 LQRSSSSSALFDGDSSDSGALDLDAHAASPS-----PGSTASGGEKLNPGWCKTASGHIKRPMNA 61

  Fly   222 FMVWAKIERKKLADENPDLHNADLSKMLGKKWRSLTPQDRRPYVEEAERLRVIHMTEHPNYKYRP 286
            ||||::|||:|:.:::||:|||::||.|||:|:.|...|:.|::.||||||:.||.::|:|||||
Zfish    62 FMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDGDKIPFIREAERLRLKHMADYPDYKYRP 126

  Fly   287 RRRKQS-------KLRAMQPGGKEQSESSPN---PGTGGSKSNPKLATPPLATAS---------- 331
            |::.:|       ||...:|..|::|...|:   ||.....|..|....|:...|          
Zfish   127 RKKVKSSGSKPSEKLSISKPSSKKRSAGKPHKKEPGPADHHSLYKAKAAPVVKQSPEKKKRLYIF 191

  Fly   332 SSYTTPTDESTCNSTNQNHGQSTPGGLYEQPLKPTYSPSSVDCYSNADSTEQIESLAANCPPALL 396
            ||.::|:..:.                   |..||.|       |:||:::         |.:|.
Zfish   192 SSSSSPSPAAV-------------------PASPTLS-------SSADTSD---------PLSLY 221

  Fly   397 NESSPTG-----GGYDNSLLLKKLTKPSPSRAAKSRQEKLAKSEEK 437
            .::|.:|     ..|..|.:  :...|:||.|..|...:.:.|.::
Zfish   222 EDASGSGKEDADTRYTGSSM--RAPSPTPSAAHSSSSSQFSSSSDE 265

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox15NP_523739.2 SOX-TCF_HMG-box 214..285 CDD:238684 39/70 (56%)
sox4bNP_957195.1 SOX-TCF_HMG-box 54..125 CDD:238684 39/70 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10270
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.010

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