DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox15 and Hmg-2

DIOPT Version :10

Sequence 1:NP_523739.2 Gene:Sox15 / 36575 FlyBaseID:FBgn0005613 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_611553.1 Gene:Hmg-2 / 37407 FlyBaseID:FBgn0026582 Length:376 Species:Drosophila melanogaster


Alignment Length:124 Identity:26/124 - (20%)
Similarity:50/124 - (40%) Gaps:15/124 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   628 MLLGFAGMLYGLLISIFCDAHSTANFMATGSFYPMIILCGILWPLEGMPQYLQYVAYCFPFT--- 689
            ::.|...||:|:.:.:|...:..........|.|.:|....|:....:..::::|.|....|   
  Fly   542 IIFGVIHMLFGVFVGLFNHRYFKNKMAIYCEFIPQVIFLVFLFFYMTLLMFIKWVKYSASATDVV 606

  Fly   690 -----IPSIA---VRNVLTKG--WSITNSQVYMGYGAVGV--WIISLLLLCLLGLKIKK 736
                 .|||.   :..||.|.  ....:...||..|..|:  :::.:.|||:..:.:.|
  Fly   607 YSEGCAPSILITFINMVLFKAPDEHTGDCSPYMFAGQSGLQKFLVVVALLCVPWMLLAK 665

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox15NP_523739.2 HMG-box_SoxF 214..289 CDD:438841
PHA03273 305..>391 CDD:223031
Hmg-2NP_611553.1 HMG-box_HMG20 75..154 CDD:438796
Blue background indicates that the domain is not in the aligned region.

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