DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox15 and tcf7l1b

DIOPT Version :9

Sequence 1:NP_523739.2 Gene:Sox15 / 36575 FlyBaseID:FBgn0005613 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_571371.2 Gene:tcf7l1b / 30556 ZFINID:ZDB-GENE-991110-10 Length:550 Species:Danio rerio


Alignment Length:487 Identity:113/487 - (23%)
Similarity:172/487 - (35%) Gaps:162/487 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 PSYDHEHPHHL--LTNYNSKKYP------HVS-----------RTPE-------YSHSTGS--DY 39
            |...|.|.|.|  |..| |.::|      |:|           |||.       |..|.|:  ..
Zfish   162 PVVQHAHMHPLTPLITY-SNEFPPGTPPAHLSPEILDPKTGIPRTPHPAELSPYYPLSPGAVGQI 225

  Fly    40 PEHGGYLTDGRLMHESNSDAGIYHVRQGSEHSSPSLHSPAIQSSGYENEHLNEAVLAAHSHSHSP 104
            |...|:|...:..|.....||      |..|..|:|...|..||                     
Zfish   226 PHPLGWLVPQQGQHMYPITAG------GFRHPYPALAMNASMSS--------------------- 263

  Fly   105 MPMVSSAYVGGGTASGSLINSNIPLLGGGGNSVLNKFLSHPHAGMVGGGTGQMEDCTSHSPIEAA 169
              :|||.:      |..|:.                  .|||        |..:....| |...:
Zfish   264 --LVSSRF------SPHLVP------------------HHPH--------GLHQTGIPH-PAIVS 293

  Fly   170 SMWSYDYKGDLCAPNCGYLERHKPLPADLKYRPGGTQSKSAKESRIRRPMNAFMVWAKIERKKLA 234
            .:...:..|:| :|           |.:.| .||..:....|:..|::|:||||::.|..|.|:.
Zfish   294 PVIKQEPNGEL-SP-----------PVNTK-SPGPNKKDEDKKPHIKKPLNAFMLYMKEMRAKVV 345

  Fly   235 DENPDLHNADLSKMLGKKWRSLTPQDRRPYVEEAERLRVIHMTEHP------NYKYRPRRRKQSK 293
            .|.....:|.::::||::|.||:.:::..|.|.|.:.|.:|...:|      ||..|.:|::.:|
Zfish   346 AECTLKESAAINQILGRRWHSLSREEQAKYYELARKERQLHSQLYPGWSARDNYGKRKKRKRDNK 410

  Fly   294 ---------LRAMQPG----GKEQSESSPNPGTGGSKSNPKLATPPLATASSSYTTPTDESTCNS 345
                     :|:.:|.    .:|:...||....|....:|  |||..|.||.:....|       
Zfish   411 TDSTPEDFSMRSKKPCVQYLPQEKMIDSPGSSHGSMLDSP--ATPSAALASPAAPAAT------- 466

  Fly   346 TNQNHGQSTPGGLYEQPLKPTYSPSSVDCYSNADSTEQIESLAANCPPALLNESSPTGGGYDNSL 410
                |.:..      |||..|..|...             .|.:..||:..:.||.:..|.....
Zfish   467 ----HSEQA------QPLSLTTKPERF-------------PLLSKPPPSSSSSSSSSSSGLPTPP 508

  Fly   411 LLKK------LTKPSP-SRAAKSRQEKLAKSE 435
            ||.:      ||.||| .:||......|.:|:
Zfish   509 LLSRPLPFALLTPPSPFHQAALHSHHALFQSQ 540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox15NP_523739.2 SOX-TCF_HMG-box 214..285 CDD:238684 24/76 (32%)
tcf7l1bNP_571371.2 CTNNB1_binding 1..231 CDD:285538 18/69 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..76
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 298..326 8/40 (20%)
SOX-TCF_HMG-box 325..396 CDD:238684 22/70 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 58 1.000 Inparanoid score I5417
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.960

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