DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox15 and Sox8

DIOPT Version :9

Sequence 1:NP_523739.2 Gene:Sox15 / 36575 FlyBaseID:FBgn0005613 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_001100459.1 Gene:Sox8 / 302993 RGDID:1309072 Length:463 Species:Rattus norvegicus


Alignment Length:585 Identity:154/585 - (26%)
Similarity:212/585 - (36%) Gaps:193/585 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   151 GGGTGQMEDCTSHSPIEAASMWSYDYKGDLCAPNC------GYLERHKPLPADLKYRPGGTQSKS 209
            |||.|        ...|||     |.:...|..:.      ||.....|:|.    |.||..:..
  Rat    47 GGGRG--------DTAEAA-----DERFPACIRDAVSQVLKGYDWSLVPMPV----RGGGGGTLK 94

  Fly   210 AKESRIRRPMNAFMVWAKIERKKLADENPDLHNADLSKMLGKKWRSLTPQDRRPYVEEAERLRVI 274
            || ..::||||||||||:..|:||||:.|.||||:|||.|||.||.|:..::||:|||||||||.
  Rat    95 AK-PHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLSESEKRPFVEEAERLRVQ 158

  Fly   275 HMTEHPNYKYRPRRRKQSKLRAMQPGGKEQSESSPNPGTGGSKSNPKLATPPLATASSSYTTPTD 339
            |..:||:|||:|||||..|.      |:..|:|....|                           
  Rat   159 HKKDHPDYKYQPRRRKSVKT------GRSDSDSGTELG--------------------------- 190

  Fly   340 ESTCNSTNQNHGQSTPGGLYEQPLKPTYSPSSV--DCYSNADSTEQIESLAANCPPALLNESSPT 402
                     :|    |||       |.|...:|  |.:.::|.|.|...     ||         
  Rat   191 ---------HH----PGG-------PMYKTDTVLGDAHRHSDHTGQTHG-----PP--------- 221

  Fly   403 GGGYDNSLLLKKLTKPSPSRAAKSRQEKLAKSEEKNKGSQSQGQSQQGIYAATYPLAPTSVAVVA 467
                         |.|:..:....:....:|.|.:.:|.:.....:|.|..:...::..|..|: 
  Rat   222 -------------TPPTTPKTDLHQASNGSKQELRLEGRRLVDSGRQNIDFSNVDISELSSEVI- 272

  Fly   468 ARGMYVTCNNRGLLDHGHSVKGTFYPPVSVSEDDNSTSMRNSISALQQHCNVVTSTPSSSGGTMP 532
                              |...||    .|.|.|....: |..|||....:..|::.|..|    
  Rat   273 ------------------SNMDTF----DVHEFDQYLPL-NGHSALATEPSQATASGSYGG---- 310

  Fly   533 TSEMSSYTVSMADNCGNLRLSMNELSGNEYLPSANAYGMQYEDFLRYQSNDMDYSTSAVEHKETT 597
                :||:.|.|...|     .:.:..::..|||:|...:... ||........|.|   |....
  Rat   311 ----ASYSHSGATGIG-----ASPVWAHKGAPSASASPTEAGP-LRPHIKTEQLSPS---HYNDQ 362

  Fly   598 SDSASGQKCLKYPDTNQNYDDYEAEAYSNAMLPATAASYYTQLPYPPTSLAAFPLQLAVPFQQTT 662
            |..:.|:         .:|..|.|:|.......|||||.:.......|.|.|             
  Rat   363 SHGSPGR---------ADYGSYSAQASVTTAASATAASSFASAQCDYTDLQA------------- 405

  Fly   663 SGAYGAQPIQSGYLHYGNYGGYEGMAQSQPQN--QAPVHHQQA---SHSAPPSLSVPPNQTVTSN 722
                      |.|  |..|.||       |.:  |.|..|...   :.|....||:||..:.:||
  Rat   406 ----------SNY--YSPYPGY-------PPSLYQYPYFHSSRRPYASSLLNGLSMPPAHSPSSN 451

  Fly   723  722
              Rat   452  451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox15NP_523739.2 SOX-TCF_HMG-box 214..285 CDD:238684 45/70 (64%)
Sox8NP_001100459.1 Sox_N 18..86 CDD:403592 13/55 (24%)
SOX-TCF_HMG-box 98..168 CDD:238684 44/69 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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