DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sox15 and Sox4

DIOPT Version :9

Sequence 1:NP_523739.2 Gene:Sox15 / 36575 FlyBaseID:FBgn0005613 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_033264.2 Gene:Sox4 / 20677 MGIID:98366 Length:440 Species:Mus musculus


Alignment Length:458 Identity:112/458 - (24%)
Similarity:184/458 - (40%) Gaps:124/458 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   202 PGGTQSKSAK----------ESRIRRPMNAFMVWAKIERKKLADENPDLHNADLSKMLGKKWRSL 256
            ||.|.|...|          ...|:|||||||||::|||:|:.:::||:|||::||.|||:|:.|
Mouse    36 PGSTASTGGKADDPSWCKTPSGHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLL 100

  Fly   257 TPQDRRPYVEEAERLRVIHMTEHPNYKYRPRRRKQS------KLRAMQPG--GKEQSESSPNPGT 313
            ...|:.|:::||||||:.||.::|:||||||::.:|      .....:||  |.:.:.||.:.|:
Mouse   101 KDSDKIPFIQEAERLRLKHMADYPDYKYRPRKKVKSGNAGAGSAATAKPGEKGDKVAGSSGHAGS 165

  Fly   314 --------GGSKSNPKLATPPLATASSSYTTPTDESTCNSTNQNHGQSTPGGLYEQPLKPTYSPS 370
                    |.||..||.:..|....|             |..:.|.:..|.|  ......::|| 
Mouse   166 SHAGGGAGGSSKPAPKKSCGPKVAGS-------------SVGKPHAKLVPAG--GSKAAASFSP- 214

  Fly   371 SVDCYSNADSTEQIESLAANCPPALL-----NESSPTGGGYDNSLLLKKLTKPSPSR-------- 422
                       ||...|....|.|:.     :.::|......:|.|......|:..:        
Mouse   215 -----------EQAALLPLGEPTAVYKVRTPSAATPAASSSPSSALATPAKHPADKKVKRVYLFG 268

  Fly   423 -------------AAKSRQEKLAKSEEKNKGSQSQGQSQQG-IYAATYPLAPTSVAVVAARGMYV 473
                         |:....:.|...|:...|....|:|..| ..||:.|.|..|.|         
Mouse   269 SLGASASPVGGLGASADPSDPLGLYEDGGPGCSPDGRSLSGRSSAASSPAASRSPA--------- 324

  Fly   474 TCNNRGLLDH-GHSVKGTFYPPVSVSEDDNSTSMRNSISALQQHCNVVTSTPSSSGGTMPTSEMS 537
                    || |::......|..|.:....|:|:.:|.|             ||||.:....|..
Mouse   325 --------DHRGYASLRAASPAPSSAPSHASSSLSSSSS-------------SSSGSSSSDDEFE 368

  Fly   538 SYTVSMADNCGNLRLSMNELSGNEYL---------PSANAYGMQYEDFLRYQSNDM---DYSTSA 590
            ...:.:..:.....:|:...|.:..|         |.:.:: .::.|:...:.::|   |:..|:
Mouse   369 DDLLDLNPSSNFESMSLGSFSSSSALDRDLDFNFEPGSGSH-FEFPDYCTPEVSEMISGDWLESS 432

  Fly   591 VEH 593
            :.:
Mouse   433 ISN 435

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox15NP_523739.2 SOX-TCF_HMG-box 214..285 CDD:238684 39/70 (56%)
Sox4NP_033264.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..58 5/21 (24%)
SOX-TCF_HMG-box 58..129 CDD:238684 39/70 (56%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 128..211 22/97 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 234..258 4/23 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 272..382 27/139 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10270
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.910

Return to query results.
Submit another query.