DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sox15 and Sox1

DIOPT Version :9

Sequence 1:NP_523739.2 Gene:Sox15 / 36575 FlyBaseID:FBgn0005613 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_033259.2 Gene:Sox1 / 20664 MGIID:98357 Length:391 Species:Mus musculus


Alignment Length:520 Identity:111/520 - (21%)
Similarity:176/520 - (33%) Gaps:196/520 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 LHSPAIQSSGYENEHLNEAVLAAHSHSHSPMPMVSSAYVGGGTASGSLINSNIPLLGGGGNSVLN 139
            ||||                    ..:.:|..:...|..|||              ||||.    
Mouse    10 LHSP--------------------GGAQAPTNLSGPAGAGGG--------------GGGGG---- 36

  Fly   140 KFLSHPHAGMVGGGTGQMEDCTSHSPIEAASMWSYDYKGDLCAPNCGYLERHKPLPADLKYRPGG 204
                       |||.|                                               ||
Mouse    37 -----------GGGGG-----------------------------------------------GG 43

  Fly   205 TQSKSAKESRIRRPMNAFMVWAKIERKKLADENPDLHNADLSKMLGKKWRSLTPQDRRPYVEEAE 269
            |:   |.:.|::|||||||||::.:|:|:|.|||.:||:::||.||.:|:.::..::||:::||:
Mouse    44 TK---ANQDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAK 105

  Fly   270 RLRVIHMTEHPNYKYRPRRRKQSKLR------------AMQPGGKEQSESSPNPGTGGSKSNPKL 322
            |||.:||.|||:|||||||:.::.|:            |...||..........|.|.:....:|
Mouse   106 RLRALHMKEHPDYKYRPRRKTKTLLKKDKYSLAGGLLAAGAGGGGAAVAMGVGVGVGAAAVGQRL 170

  Fly   323 ATP---------------------PLATASSSYTTPTDESTCNSTNQNHGQSTPGGLYEQPLKP- 365
            .:|                     .:|.|:::.....:.......:...|.:.|   :..|..| 
Mouse   171 ESPGGAAGGGYAHVNGWANGAYPGSVAAAAAAAAMMQEAQLAYGQHPGAGGAHP---HAHPAHPH 232

  Fly   366 ----------------------TYSP-SSVDCYSNADSTEQIESLAANCP-PALLNESSPTGGGY 406
                                  .||| |:...|.:|.     .|.....| .|....::..||.:
Mouse   233 PHHPHAHPHNPQPMHRYDMGALQYSPISNSQGYMSAS-----PSGYGGIPYGAAAAAAAAAGGAH 292

  Fly   407 DNSLLLKKLTKPSPSRAAKSRQEKLAKSEEKNKGSQSQGQSQQGIYAATYPLAPTSVAVVAARGM 471
            .||.:.......:.|..|......|.|||.  .||..         |..:..||....:.....|
Mouse   293 QNSAVAAAAAAAAASSGALGALGSLVKSEP--SGSPP---------APAHSRAPCPGDLREMISM 346

  Fly   472 YVTCNNRGLLDHGHSVKGTFYPPVSVSEDDNSTSMRNSISALQQHCNVVTSTPSSSGGTMPTSEM 536
            |:.....|             .|.:.:    :.:.::.:.:|.||   .....:...||:|.:.:
Mouse   347 YLPAGEGG-------------DPAAAA----AAAAQSRLHSLPQH---YQGAGAGVNGTVPLTHI 391

  Fly   537  536
            Mouse   392  391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox15NP_523739.2 SOX-TCF_HMG-box 214..285 CDD:238684 37/70 (53%)
Sox1NP_033259.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..52 22/140 (16%)
SOX-TCF_HMG-box 50..121 CDD:238684 37/70 (53%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 214..249 4/37 (11%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10270
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.910

Return to query results.
Submit another query.