DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox15 and sox-3

DIOPT Version :9

Sequence 1:NP_523739.2 Gene:Sox15 / 36575 FlyBaseID:FBgn0005613 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_510439.1 Gene:sox-3 / 185534 WormBaseID:WBGene00004950 Length:212 Species:Caenorhabditis elegans


Alignment Length:201 Identity:66/201 - (32%)
Similarity:104/201 - (51%) Gaps:34/201 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   176 YKGDLC--APNCGYLERHKPLPADLKYRPGGTQSKSAKESRIRRPMNAFMVWAKIERKKLADENP 238
            |...||  |....|.|....:.:.|. .||...........::|||||||||::.:|:|:|.:||
 Worm     8 YPSLLCTEAAKTSYDEDTTSVSSGLS-PPGSPVDLQNSLDHVKRPMNAFMVWSRGQRRKMAQDNP 71

  Fly   239 DLHNADLSKMLGKKWRSLTPQDRRPYVEEAERLRVIHMTEHPNYKYRPRRRKQSKLRAMQPGGKE 303
            .:||:::||.||.:|:.|:.|::||:::||:|||.:||.|||:|||||||:              
 Worm    72 KMHNSEISKRLGAEWKQLSEQEKRPFIDEAKRLRALHMKEHPDYKYRPRRK-------------- 122

  Fly   304 QSESSPNPGTGGSKSNPKL--ATPPLATAS-SSYTTPTDESTCNSTNQNHGQSTPGGLYEQPL-- 363
                   |.:...|..|:|  |.|.:...| .:|:|..|....:..:|.:     ...::.|:  
 Worm   123 -------PKSSNLKQQPRLNIAMPTIPPQSLFNYSTAFDSLKTHDLSQYY-----SSFFQSPVLS 175

  Fly   364 KPTYSP 369
            ..||:|
 Worm   176 GSTYAP 181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox15NP_523739.2 SOX-TCF_HMG-box 214..285 CDD:238684 37/70 (53%)
sox-3NP_510439.1 SOX-TCF_HMG-box 47..118 CDD:238684 37/70 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10270
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R685
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.940

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