DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sox15 and gei-3

DIOPT Version :9

Sequence 1:NP_523739.2 Gene:Sox15 / 36575 FlyBaseID:FBgn0005613 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_001076772.1 Gene:gei-3 / 184597 WormBaseID:WBGene00001560 Length:1405 Species:Caenorhabditis elegans


Alignment Length:700 Identity:150/700 - (21%)
Similarity:233/700 - (33%) Gaps:187/700 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 RTPEYSHSTGSDYPEHGGYLTDGRLMHESNSDAGI-YHV--RQGSEHSSPSLHSPAIQSSGYENE 88
            :|.|.|.....|....||.||.....:.:.|.:.. .|.  |.|..:.:|:       |.|.:|:
 Worm   691 KTEERSDDDDDDSSGGGGGLTSTGSSNPNGSSSNFQIHTTSRSGESNVTPT-------SGGDQNQ 748

  Fly    89 HLNEAVLAAHSHSHSPMPMVSSAYVGGGTASGSL----INSNIPLLGGGGNSVLNKFLSHPHAGM 149
            :       ..|:|.:     |||.:.|...|..|    .::..|.|....:|:            
 Worm   749 N-------QQSNSRN-----SSAELAGCDMSQELSVETSDAGPPTLPSQPSSI------------ 789

  Fly   150 VGGGTGQMEDCTSHSPIEAASMWSYDYKGDLCAPNCGYLERHKPLPADLKYRPGGTQSK------ 208
                 |...:....||::             ..||..|.:.......|:|  |...||.      
 Worm   790 -----GSSVNSAFRSPVK-------------IEPNDDYEQSSVKDVMDVK--PEVFQSAKERRRS 834

  Fly   209 --SAKESRIRRPMNAFMVWAKIERKKLADENPDLHNADLSKMLGKKWRSLTPQDRRPYVEEAERL 271
              ||.|..:||||||||:::|..|..:..:.|:..|..:||:||:.|.||....:..|.:.|.::
 Worm   835 KVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKAEYHKLATQV 899

  Fly   272 RVIHMTEHPNYKYRPRRRKQSKLRAMQPGGKEQSESSPNPGTGGSKSNPKLATPPLATASSSYTT 336
            :..|...||::|:   ..|:.|:::      |...::|            :|..||......:..
 Worm   900 KEAHFKAHPDWKW---STKEKKIKS------ESLNTTP------------VALTPLKNKVFDFDI 943

  Fly   337 PTDESTCNSTNQNHGQSTPGGLYEQPLKP-TYSPSSVDCYSNADSTEQIES---------LAANC 391
            .|.:....|       ...|.....|:.| |...|:....|:.|||:...|         ::.:.
 Worm   944 RTSDDLAKS-------FVDGTALLSPMTPMTPGASAFRHLSSRDSTQSSTSSFDFPGLPLMSPSL 1001

  Fly   392 PPALLNESSPTGGGYDNSLLLKKLTKPSPSRAAKSRQEKLAKSEEKNKGSQSQGQSQQGIYAATY 456
            ....:|.:|.|             :.|:.|.|..|.|...          :|..|...|:|....
 Worm  1002 SAISMNTASIT-------------SSPALSSATPSFQFDF----------ESLKQGTAGVYPTFN 1043

  Fly   457 P-----LAPTSVAVVAARGMYVTCNNRGLLDHGHSVKGTFYPPVSVSEDDNSTSMRNSISALQQH 516
            |     |..:|........||.|           .:...|.|..|.....|.|.  :||......
 Worm  1044 PAMISTLVNSSTPCRQILPMYNT-----------DISSFFLPTASAFRVLNPTI--SSIIGGFSS 1095

  Fly   517 CNVVTSTPSSSGGTMPTSEMS-SYTVSMADNCGNLRLSMNELS------GNEYLPSAN------- 567
            .:.||:...:...||...:|| ..|.||.........|::.|.      |...|||.|       
 Worm  1096 ADTVTTPLGAPATTMAAMKMSFPETASMLPQLQEKLESVSFLDQIKIEPGETPLPSPNVVRPTII 1160

  Fly   568 ------AYGMQYEDFLRYQSNDMDYSTSAVEHKETTSDSASGQKCLKYPDTNQNYDDYEA----- 621
                  |...|:  .|:.....:....:....:|..:|.....|..|..|  :..|...|     
 Worm  1161 PTAQFLAPTQQF--VLQPTPAQLGIRRNKRPLREIDTDVTVSAKLFKRND--EQMDKLLARVGFT 1221

  Fly   622 EAYSNAMLPATAASYYTQLPYPPTSLAAFPLQLAVPFQ---QTTSGAYGA 668
            |.:  |.||......|.::|..|        .|..||:   |..|..:||
 Worm  1222 EKF--AQLPEFTPKIYNEIPASP--------NLPTPFKTPGQDQSIFFGA 1261

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox15NP_523739.2 SOX-TCF_HMG-box 214..285 CDD:238684 25/70 (36%)
gei-3NP_001076772.1 DUF4819 194..275 CDD:374357
SOX-TCF_HMG-box 842..912 CDD:238684 24/69 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.