DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox15 and sem-2

DIOPT Version :9

Sequence 1:NP_523739.2 Gene:Sox15 / 36575 FlyBaseID:FBgn0005613 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_740846.1 Gene:sem-2 / 172162 WormBaseID:WBGene00004771 Length:404 Species:Caenorhabditis elegans


Alignment Length:408 Identity:109/408 - (26%)
Similarity:169/408 - (41%) Gaps:96/408 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   150 VGGGTGQMEDCTSHSPIEAASMWSYDYKGDLCAPNCGYLERHKPLPADLKYRPGGTQSKSAKESR 214
            |...|....:.||.:.:..:....:...|....   ||....:.:|..:......|..|.: .:.
 Worm    32 VASSTSGATNATSSNSVATSQQLQHHPYGTAAG---GYKHAQQAIPKSVTPYSDATNCKKS-SNH 92

  Fly   215 IRRPMNAFMVWAKIERKKLADENPDLHNADLSKMLGKKWRSLTPQDRRPYVEEAERLRVIHMTEH 279
            |:|||||||||:::||:|:.:..||:|||::||.||.:|||||.:::.|:|.|||||||.||.|:
 Worm    93 IKRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDEEKAPFVAEAERLRVCHMQEY 157

  Fly   280 PNYKYRPRRRKQSKLRAMQPGGKEQSESSPN-------PGTGGSKSNPKLATPPLATASSSY--- 334
            |:|||:||::.:.     .|.|..|..:.|.       |..|.|....:...|.....|.:.   
 Worm   158 PDYKYKPRKKPKK-----NPDGTLQQPAQPQAPQQQQAPPRGASPQARQRKRPNTDQQSETQQFQ 217

  Fly   335 ---TTPTDESTCNSTNQNHGQSTPGGLYEQPLKPTY-SPSSVDCYSNADSTEQIESLAANCPPAL 395
               :...::....:.:.:|.|       :.|..|:| |||.   :.:|..|              
 Worm   218 NFKSVKVEQDWMGNAHMSHAQ-------KMPFHPSYPSPSE---FGHAPLT-------------- 258

  Fly   396 LNESSPTGGGYDNSLLLKKLTKPSPSRAAKSRQEKLAKSEEKNKGSQSQGQSQQGIYAATYPLAP 460
                 |..|.||:..            ..:..|:..|.....:.||               ||..
 Worm   259 -----PESGFYDDYF------------TQQHHQQHFASQHHNSAGS---------------PLRM 291

  Fly   461 TSVAVVAARGMYVTCNNRGLLDHGHSVKGTFY---PPVSVSEDD-NSTSMRNS----ISALQQHC 517
            |::.:.......:..:|.|.....|    .||   .|.||.:|| .|.|..:|    .||.:|. 
 Worm   292 TNLGMDMGMPPQMMGHNSGFGAGNH----PFYLHTSPPSVDQDDMRSLSSGSSGYADCSASEQS- 351

  Fly   518 NVVTSTPSSSG-GTMPTS 534
               ||:|:|:| .||.|:
 Worm   352 ---TSSPNSAGVVTMATA 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox15NP_523739.2 SOX-TCF_HMG-box 214..285 CDD:238684 42/70 (60%)
sem-2NP_740846.1 SOX-TCF_HMG-box 92..159 CDD:238684 39/66 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10270
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R685
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.940

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