DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox15 and Sox5

DIOPT Version :10

Sequence 1:NP_523739.2 Gene:Sox15 / 36575 FlyBaseID:FBgn0005613 Length:784 Species:Drosophila melanogaster
Sequence 2:XP_006237666.1 Gene:Sox5 / 140587 RGDID:620471 Length:764 Species:Rattus norvegicus


Alignment Length:391 Identity:98/391 - (25%)
Similarity:160/391 - (40%) Gaps:102/391 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 GRLMHESNSDAGIYHVRQGSEHSSPSLHSPAIQSSGYENEHLNEAVLAAHSHSHSP----MPMVS 109
            |:|:.....:.|. .|...|.|:..|.:||..:|.....:.||.:.....|...||    .|.:.
  Rat   356 GKLLGLPQGNLGA-AVSPTSIHTDKSTNSPPPKSKDEVAQPLNLSAKPKTSDGKSPASPTSPHMP 419

  Fly   110 SAYVGGGTASGSLINSNIPLLGGGGNSVLNKFLSHPHAGMVGGGTGQMEDCTSHSPIEAASM--- 171
            :..:..|...   :.:::|..           |:.|.|.:...|.....|..:.:..||..|   
  Rat   420 ALRINSGAGP---LKASVPAA-----------LASPSARVSTIGYLNDHDAVTKAIQEARQMKEQ 470

  Fly   172 -----WSYDYK----GDLCAPNCGYLERHKP---------------------------LPADLKY 200
                 .:.|.|    ..:...|| ..|:.|.                           :..|...
  Rat   471 LRREQQALDGKVAVVNSIGISNC-RTEKEKTTLESLTQQLAVKQNEEGKFSHGMMDFNMSGDSDG 534

  Fly   201 RPGGTQSKSAKESR--------IRRPMNAFMVWAKIERKKLADENPDLHNADLSKMLGKKWRSLT 257
            ..|.::|:..:|||        |:|||||||||||.||:|:....||:||:::||:||.:|:::|
  Rat   535 SAGVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMT 599

  Fly   258 PQDRRPYVEEAERLRVIHMTEHPNYKYRPRRRKQ-----SKLR-----AMQPGGKEQSESSPNPG 312
            ..:::||.||..||...|:.::|:|||:||.::.     .|||     |:....:::.....|.|
  Rat   600 NLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMRQYFNVG 664

  Fly   313 TGGSKSNPKLATPPLATASSSYT------------TPTDESTCNSTNQNHG----QSTPGGLYEQ 361
                    :.|..|:|||...|.            .|::.|:.:|:.: .|    |||.|...|:
  Rat   665 --------QQAQIPIATAGVVYPGAIAMAGMPSPHLPSEHSSVSSSPE-PGMPVIQSTYGVKGEE 720

  Fly   362 P 362
            |
  Rat   721 P 721

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox15NP_523739.2 HMG-box_SoxF 214..289 CDD:438841 39/82 (48%)
PHA03273 305..>391 CDD:223031 18/74 (24%)
Sox5XP_006237666.1 HMG-box_EGL13-like 555..632 CDD:438848 38/76 (50%)

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