DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sox15 and sox14

DIOPT Version :10

Sequence 1:NP_523739.2 Gene:Sox15 / 36575 FlyBaseID:FBgn0005613 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_001093703.1 Gene:sox14 / 100101715 XenbaseID:XB-GENE-485370 Length:239 Species:Xenopus tropicalis


Alignment Length:215 Identity:73/215 - (33%)
Similarity:104/215 - (48%) Gaps:48/215 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   215 IRRPMNAFMVWAKIERKKLADENPDLHNADLSKMLGKKWRSLTPQDRRPYVEEAERLRVIHMTEH 279
            |:|||||||||::.:|:|:|.|||.:||:::||.||.:|:.|:..::|||::||:|||..||.||
 Frog     8 IKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEH 72

  Fly   280 PNYKYRPRRRKQSKLRAMQPGGKEQSESSPNPGTGGSKSNPKLATPPLATASSSYTTPTDESTCN 344
            |:|||||||:.::.|       |:.....|.|..|..        .||.|..|          .:
 Frog    73 PDYKYRPRRKPKNLL-------KKDRYVFP
LPYLGDH--------DPLKTGLS----------MS 112

  Fly   345 STNQNHGQSTPGGLYEQPLKPTYS---PSSVDCYSNADSTEQIESLAA----------------- 389
            :|:...|.|.....:..|....||   ||.....:....||...:|||                 
 Frog   113 ATDSLLGASEKARAFLPPTSAPYSLLDPSQFSSTTIQKMTEMPHTLAASTLPYASTLGYQNGAFG 177

  Fly   390 --NCPPALLN-ESSPTGGGY 406
              :||....: ..|||..||
 Frog   178 GLSCPSQHTHTHPSPTNPGY 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox15NP_523739.2 HMG-box_SoxF 214..289 CDD:438841 43/73 (59%)
PHA03273 305..>391 CDD:223031 20/107 (19%)
sox14NP_001093703.1 HMG-box_SoxB 6..85 CDD:438790 44/76 (58%)
SOXp 77..>95 CDD:463537 7/24 (29%)

Return to query results.
Submit another query.