DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox15 and sox17b.2

DIOPT Version :9

Sequence 1:NP_523739.2 Gene:Sox15 / 36575 FlyBaseID:FBgn0005613 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_001090837.1 Gene:sox17b.2 / 100038235 XenbaseID:XB-GENE-495335 Length:351 Species:Xenopus tropicalis


Alignment Length:479 Identity:131/479 - (27%)
Similarity:184/479 - (38%) Gaps:162/479 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   186 GYLERHKPL----PADLKYRPGGTQSKSAKESRIRRPMNAFMVWAKIERKKLADENPDLHNADLS 246
            |..|...||    .|..|...|...|:...|:||||||||||||||.|||:||.:|||||||:||
 Frog     3 GQYEWTDPLTMFQDAKTKKEAGSANSRGKAEARIRRPMNAFMVWAKDERKRLAQQNPDLHNAELS 67

  Fly   247 KMLGKKWRSLTPQDRRPYVEEAERLRVIHMTEHPNYKYRPRRRKQSKLRAMQPGGKEQSESSPNP 311
            |||||.|:|||...:||:|:|||||||.|:.::|:|||||||:||.|   .:..|...|...|.|
 Frog    68 KMLGKSWKSLTLASKRPFVKEAERLRVQHIQDYPDYKYRPRRKKQVK---REEEGFLPSADIPGP 129

  Fly   312 GTGGSKSNPKLATPPLATASSSYTTPTDESTCNSTNQNHGQSTPGGLYE--QPLKPTYSPSSVDC 374
            ...|..          |....:|     :...:..|....|.||.|.:|  .|:...|...:|..
 Frog   130 QVMGCN----------AMVGQNY-----KMQYSGQNSQQSQITPAGYFEDHNPVGFYYRGYNVPK 179

  Fly   375 YSNADSTEQIESLAANCPPALLNESSPTGGGYD------NSLLL---KKLTKPSPSRAAKSRQEK 430
            |..:.::      :..|.|       ||.|.|.      ||..:   :..:.|:..:....::..
 Frog   180 YYMSQNS------SGYCSP-------PTQGEYQALSYNFNSSYIPYQQNASAPAMGKQMAVKENI 231

  Fly   431 LAKSEEKN-KGSQSQGQSQQG-IY----AATYPLAPTSVAVVAARGMYVTCNNRGLLDHGHSVKG 489
            :.:|.|.. .|.|...|...| :|    |.|:|:|.|.                   .|      
 Frog   232 IQESPEHGIMGCQVSPQMYNGQMYVPECAKTHPVAQTE-------------------QH------ 271

  Fly   490 TFYPPVSVSEDDNSTSMRNSISALQQHCNVVTSTPSSSGGTMPTSEMSSYTVSMADNCGNLRLSM 554
                                 |:|.|...:||               .:|..|..|  |:|...:
 Frog   272 ---------------------SSLHQSQQMVT---------------QNYLPSQQD--GHLESDI 298

  Fly   555 NELSGNEYLPSANAYGMQYEDFLRYQSNDMDYSTSAVEHKETTSDSASGQKCLKYPDTNQNYD-D 618
            ::              .:::.:|.|:...                           ||...|. |
 Frog   299 DK--------------TEFDQYLMYEPKS---------------------------DTELIYTID 322

  Fly   619 YEAEAYSNAMLP-----ATAASYY 637
            .::.|||..:||     |.:..||
 Frog   323 QDSGAYSTNLLPSLISEANSVCYY 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox15NP_523739.2 SOX-TCF_HMG-box 214..285 CDD:238684 51/70 (73%)
sox17b.2NP_001090837.1 SOX-TCF_HMG-box 35..106 CDD:238684 51/70 (73%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 116 1.000 Domainoid score I5873
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 1 1.000 - - otm47877
Panther 1 1.100 - - O PTHR10270
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R685
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.040

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