DRSC/TRiP Functional Genomics Resources

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Protein Alignment VGAT and AVT6

DIOPT Version :9

Sequence 1:NP_610938.1 Gene:VGAT / 36574 FlyBaseID:FBgn0033911 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_011044.1 Gene:AVT6 / 856855 SGDID:S000000921 Length:448 Species:Saccharomyces cerevisiae


Alignment Length:424 Identity:87/424 - (20%)
Similarity:166/424 - (39%) Gaps:106/424 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 GMFIVSLPFAVLHGGYWAIVAMVGIAHICCYTGKVLVQCLYEPDPATGQMVRVRDSYVAIAKVCF 220
            |..|:::|:|....|....|.|:.:...|.      :|.|:........:.:.|.|:.|:.:: .
Yeast    18 GAGILAMPYAFKPFGLIPGVIMIVLCGACA------MQSLFIQARVAKYVPQGRASFSALTRL-I 75

  Fly   221 GPKLGARAVSIAQLIELLMTCILYVVVCGDLLAGTYPQ--GSFDSRSWM--------LFVGIFLL 275
            .|.||. ...:|..|:.....:.|::|.|||:    ||  ..:...:|:        |.:..|:.
Yeast    76 NPNLGI-VFDLAIAIKCFGVGVSYMIVVGDLM----PQIMSVWTRNAWLLNRNVQISLIMLFFVA 135

  Fly   276 PMGFLK--------SLKMVSTLSFWCTMSHIVINAVILGYC-----LLQIGDWGWSKVRFSIDME 327
            |:.|||        |:..:|::::.|.:       |:|.|.     :|::.    .::.:.:..:
Yeast   136 PLSFLKKLNSLRYASMVAISSVAYLCVL-------VLLHYVAPSDEILRLK----GRISYLLPPQ 189

  Fly   328 NFPI----SLGVIVFSYTSQIFLPTLEGNMID------RSKFNWMLDWSHIA---AAVFKAGFGY 379
            :..:    :|.:.||:|       |...||..      .|:|..::....||   |.:.....|.
Yeast   190 SHDLNVLNTLPIFVFAY-------TCHHNMFSIINEQRSSRFEHVMKIPLIAISLALILYIAIGC 247

  Fly   380 ICFLTFQNDTQQVITN--NLHSQGFKGMV-NFFLVIKALLSYPLPYYAA--------CELLERNF 433
            ..:|||.::   :|.|  .|:.|.....: ...:|:..:|::||..:.|        ....|.|.
Yeast   248 AGYLTFGDN---IIGNIIMLYPQAVSSTIGRIAIVLLVMLAFPLQCHPARASIHQILQHFAEENV 309

  Fly   434 FRGPPKTKFPTI----------WNLD-------------GELKVWGLGFRV---GVIVSTILMAI 472
            .........||:          .:||             .|..:.|..|.|   .::|::.|:||
Yeast   310 SISATSADEPTVATESSPLIRDSSLDLNEVIEEESIYQPKETPLRGKSFIVITCSILVASYLVAI 374

  Fly   473 FIPHFSILMGFIGSFTGTMLSFIWPCYFHIKIKG 506
            .:...:.::..:|:...|.:|||.|..|..|:.|
Yeast   375 SVSSLARVLAIVGATGSTSISFILPGLFGYKLIG 408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VGATNP_610938.1 SLC5-6-like_sbd 144..533 CDD:382020 87/424 (21%)
AVT6NP_011044.1 Aa_trans 1..439 CDD:279788 87/424 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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