DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment VGAT and AVT4

DIOPT Version :9

Sequence 1:NP_610938.1 Gene:VGAT / 36574 FlyBaseID:FBgn0033911 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_014298.1 Gene:AVT4 / 855622 SGDID:S000005045 Length:713 Species:Saccharomyces cerevisiae


Alignment Length:436 Identity:97/436 - (22%)
Similarity:177/436 - (40%) Gaps:96/436 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 GMFIVSLPFAVLHGGYWAIVAMV---GIAHICCYTGKVLVQC---------------LYEPDPAT 202
            |..::.||.|..:||.:..|:|:   ||....||  .:|||.               ||      
Yeast   312 GTGVLFLPNAFHNGGLFFSVSMLAFFGIYSYWCY--YILVQAKSSCGVSSFGDIGLKLY------ 368

  Fly   203 GQMVRVRDSY-VAIAKVCFGPKLGARAVSIAQLIELLMTCILYVVVCGDLLAGTYPQGSFDSRSW 266
            |..:|:...: :.|.:|.|.   ||..:..|:.::..:..:.:|        |..|....     
Yeast   369 GPWMRIIILFSLVITQVGFS---GAYMIFTAKNLQAFLDNVFHV--------GVLPLSYL----- 417

  Fly   267 MLFVGIFLLPMGFLKS---LKMVSTLSFWCTMSHIVI----NAVILGYCLLQIGDWGWSKVRFSI 324
            |:|..|..:|:.|:::   |.:.|.|:.:..|:.:||    .|..|.:.|:.....|   |.:.:
Yeast   418 MVFQTIIFIPLSFIRNISKLSLPSLLANFFIMAGLVIVIIFTAKRLFFDLMGTPAMG---VVYGL 479

  Fly   325 DMENFPISLGVIVFSYTSQIFLPTLEGNMIDRSKFNWMLDWSHIAAAVFKAGFGYICFLTFQNDT 389
            :.:.:.:.:|..:|::.....:..::.:|.:..||..:|....:.|.:.......:.:|.:.::.
Yeast   480 NADRWTLFIGTAIFAFEGIGLIIPVQDSMRNPEKFPLVLALVILTATILFISIATLGYLAYGSNV 544

  Fly   390 QQVITNNL-HSQGFKGMVNFFLVIKALLSYPLPYYAACELLERNFFRGPPKTKF----------- 442
            |.||..|| .|..|..::..|..|..:||.||..:.|.:::|..||  |..||.           
Yeast   545 QTVILLNLPQSNIFVNLIQLFYSIAIMLSTPLQLFPAIKIIENKFF--PKFTKIYVKHDDLTTRV 607

  Fly   443 ---PTIWNLDGELKVWGLGFRVGVIVSTILMAIFIPHFSI-----LMGFIGSFTGTMLSFIWPCY 499
               |....|:.::| |...|...:||   ::.:.|.:|..     .:..|||.....|.:|:|..
Yeast   608 ELRPNSGKLNWKIK-WLKNFIRSIIV---IIVVSIAYFGSDNLDKFVSVIGSLACIPLVYIYPSM 668

  Fly   500 FHIK------IKGHLLDQKEIAKDYLIIGLGV----------LFGV 529
            .|::      .||.....|.:. |.::|..|:          :|||
Yeast   669 LHLRGNSLPETKGEFWRFKPML-DTILIFFGIASMLYTSYQSIFGV 713

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VGATNP_610938.1 SLC5-6-like_sbd 144..533 CDD:382020 97/436 (22%)
AVT4NP_014298.1 Aa_trans 295..711 CDD:279788 94/432 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.