DRSC/TRiP Functional Genomics Resources

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Protein Alignment VGAT and AVT7

DIOPT Version :9

Sequence 1:NP_610938.1 Gene:VGAT / 36574 FlyBaseID:FBgn0033911 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_012178.1 Gene:AVT7 / 854721 SGDID:S000001350 Length:490 Species:Saccharomyces cerevisiae


Alignment Length:513 Identity:90/513 - (17%)
Similarity:181/513 - (35%) Gaps:173/513 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   149 NVTNAIQGMFIVSLPFAVLHGGYWAIVAMVGIAHICCYTGK-VLVQCLYEPDPATGQMVRVRD-S 211
            |:...|.|...:::|::....|....|.:..:|.:....|. ||.:|       :..::..|: |
Yeast    13 NLVKTIVGAGTLAIPYSFKSDGVLVGVILTLLAAVTSGLGLFVLSKC-------SKTLINPRNSS 70

  Fly   212 YVAIAKVCFGPKLGARAVSIAQLIELLMTCILYVVVCGDLLAGTYPQGSFDSRSWMLFVGIFLLP 276
            :..:..:.: |.| |....:|.:::.....:.|:|:.|||..|.:   ..:...|::...:.::|
Yeast    71 FFTLCMLTY-PTL-APIFDLAMIVQCFGVGLSYLVLIGDLFPGLF---GGERNYWIIASAVIIIP 130

  Fly   277 MGFLKSLKMVSTLSFWCTMSHIVINAVILGYCLLQIG----------DWGWSKVRFSIDMENFPI 331
            :..:|.|..:...|.....:...|:.::..:.:.::|          |..|.|:.   |.:....
Yeast   131 LCLVKKLDQLKYSSILGLFALAYISILVFSHFVFELGKGELTNILRNDICWWKIH---DFKGLLS 192

  Fly   332 SLGVIVFSYTSQIFLPTLEGNMIDRSKFN--WMLDWS-HIAAAVFKAGFGYICFLTFQNDTQQVI 393
            :..:|:|::|..:.|..:...:.|.|..|  ::::.| .::.|:|.. .|...:|||.|:|    
Yeast   193 TFSIIIFAFTGSMNLFPMINELKDNSMENITFVINNSISLSTALFLI-VGLSGYLTFGNET---- 252

  Fly   394 TNNLHSQGFKGMVNF-----FLVI-------KALLSYPLPYY----------------------- 423
            ..||       |:|:     ::||       ..:||:||.::                       
Yeast   253 LGNL-------MLNYDPNSIWIVIGKFCLGSMLILSFPLLFHPLRIAVNNVIIWIEITYGGANPE 310

  Fly   424 --------------------------------------AACELLERNFFRGP------------- 437
                                                  ..|.|...||..|.             
Yeast   311 EDPQVSEYTRASNLRPISMTVEDPAQPSDALDATSYNEQECLLPNGNFDNGSIESQENNNDERGT 375

  Fly   438 -------------PKTKFPTIWNLDGELKVWGLGFRVGVIVSTILMAIFIPHFSILMGFIGSFTG 489
                         .|::|..|..|              :::|...:|:.:..|::::.|:|:...
Yeast   376 MAVAGDNEHHAPFVKSRFYWITAL--------------LLISMYTLALSVQSFALVLSFVGATGS 426

  Fly   490 TMLSFIWPCYFHIKIKGHLLDQKEIAK------------DYLII--GLGVLFGVIGIY 533
            |.:||..|.....|:.|  ||...|.|            ..|::  ||.|:|  :.:|
Yeast   427 TSISFTLPGLLGYKLIG--LDSLAIGKMIPPKDRFYKRCSLLLVFYGLSVMF--LSLY 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VGATNP_610938.1 SLC5-6-like_sbd 144..533 CDD:382020 89/511 (17%)
AVT7NP_012178.1 Aa_trans 4..477 CDD:279788 89/508 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S2954
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.760

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