DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment VGAT and AVT1

DIOPT Version :9

Sequence 1:NP_610938.1 Gene:VGAT / 36574 FlyBaseID:FBgn0033911 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_012534.1 Gene:AVT1 / 853457 SGDID:S000003761 Length:602 Species:Saccharomyces cerevisiae


Alignment Length:564 Identity:123/564 - (21%)
Similarity:223/564 - (39%) Gaps:120/564 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 PPLRNIL-NVAVQTARQQIPERKDYEQPPGSTAQQHHHSQQAQHKAMEAGMDGGDTTEMSSNPFR 76
            |.:.|:. |..|.||...|.: .||.....||.                    ||    |.:..|
Yeast   124 PRITNLANNDRVSTASMAIHD-DDYGSIQNSTI--------------------GD----SGSILR 163

  Fly    77 NAGSWTNDGEGGGDGDGEYRNEYQSTSFNEYDGRYQQTDGFRQGSIASEGSSFVCEGEGGGGCKI 141
            ...|.| :...||.|.....|:..|......:|    .||.....:|.:.::             
Yeast   164 PTASLT-EMMSGGAGRRFTNNDMDSIVVKRVEG----VDGKVVTLLAGQSTA------------- 210

  Fly   142 DEFQAAWNVTNAIQGMFIVSLPFAVLHGGYWAI----VAMVGIAHICCYTGKVLVQCLYEPDPAT 202
              .|..:|..|.:.|:.:::||..:.:.| |.|    :|:..:|..|  |.::|.:|| :.||..
Yeast   211 --PQTIFNSINVLIGIGLLALPLGLKYAG-WVIGLTMLAIFALATFC--TAELLSRCL-DTDPTL 269

  Fly   203 GQMVRVRDSYVAIAKVCFGPKLGARAVSIAQLIELLMTCILYVVVCGDLLAGTYPQGS---FDSR 264
                   .||..:....||.| |...:|....::||.:.:..|::.||.|...:||.|   |...
Yeast   270 -------ISYADLGYAAFGTK-GRALISALFTLDLLGSGVSLVILFGDSLNALFPQYSTTFFKIV 326

  Fly   265 SWMLFVGIFLLPMGFLKSLKMVSTLSFWCTMSHIVINAVILGYCLLQIGDWGWSKVR------FS 323
            |:.:......:|:..|.::.::..||...|:       :::..|.|.......|.|.      :.
Yeast   327 SFFIVTPPVFIPLSVLSNISLLGILSTTGTV-------LVICCCGLYKSSSPGSLVNPMETSMWP 384

  Fly   324 IDMENFPISLGVIVFSYTSQIFLPTLEGNMIDRSKFNWMLDWSHIAAAVFKAGFGYICFLTFQND 388
            ||:::..:|:|::...:......|.|:.:|....||...|..::...:|...|...|.||.|.|.
Yeast   385 IDLKHLCLSIGLLSACWGGHAVFPNLKTDMRHPDKFKDCLKTTYKITSVTDIGTAVIGFLMFGNL 449

  Fly   389 TQQVITNN-LHSQGFK----GMVNFFLVIKALLSYPL---PYYAACELL-------------ERN 432
            .:..||.| |.::|:.    |:::..:.|..:...||   |..:..::|             :|.
Yeast   450 VKDEITKNVLLTEGYPKFVYGLISALMTIIPIAKTPLNARPIVSVLDVLMNVQHIDEAASAIKRR 514

  Fly   433 FFRGPPKTKFPTIWNLDGELKVWGLGFRVGVIVSTILMAIFIPHFSILMGFIGSFTGTMLSFIWP 497
            ..:|               |:|:.   |:.:.|..:|:||..|.|..::.|:|:.....:..|.|
Yeast   515 AAKG---------------LQVFN---RIFINVVFVLIAINFPEFDKIIAFLGAGLCFTICLILP 561

  Fly   498 CYFHIKIKGHLLDQKEIAKDYLIIGLGVLFGVIGIYDSGNALIN 541
            |:|::::....:...|....::.|.:.|:...:|:   |.|:|:
Yeast   562 CWFYLRLCKTTIKPWERVACHVTICISVVLSTLGV---GAAIIS 602

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VGATNP_610938.1 SLC5-6-like_sbd 144..533 CDD:382020 94/422 (22%)
AVT1NP_012534.1 Aa_trans 206..601 CDD:279788 96/449 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 77 1.000 Domainoid score I2092
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 77 1.000 Inparanoid score I1644
Isobase 1 0.950 - 0 Normalized mean entropy S2954
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - oto98934
orthoMCL 1 0.900 - - OOG6_100570
Panther 1 1.100 - - O PTHR48017
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2046
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
109.800

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