DRSC/TRiP Functional Genomics Resources

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Protein Alignment VGAT and AT1G61270

DIOPT Version :9

Sequence 1:NP_610938.1 Gene:VGAT / 36574 FlyBaseID:FBgn0033911 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_176322.1 Gene:AT1G61270 / 842421 AraportID:AT1G61270 Length:451 Species:Arabidopsis thaliana


Alignment Length:456 Identity:103/456 - (22%)
Similarity:172/456 - (37%) Gaps:108/456 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 FQAAWNVTNAIQGMFIVSLPFAVLHGGYW--AIVAMVGIAHICCYTGKVLVQCLYEPDPATGQMV 206
            :.|..||| ||.|..::.||:|:...| |  .:|.::....|..||              ..||:
plant    40 YSAFHNVT-AIVGAGVLGLPYAMSELG-WGPGVVVLILSWVITLYT--------------FWQMI 88

  Fly   207 RVR--------DSYVAIAKVCFGPKLGARAVSIAQLIELLMTCILYVVVCGD-------LLAGTY 256
            .:.        |.|..:.:..||.|||...|...||:.....||:|:|..|:       |..|.|
plant    89 EMHEMFEGKRFDRYHELGQAAFGKKLGLYIVVPLQLLVETSACIVYMVTGGESLKKIHQLSVGDY 153

  Fly   257 PQGSFDSRSWMLFVGIFLLPMGFLKSLKMV--------------STLSFWCTMSHIVINAVILGY 307
            .......|.::|........:..||:...:              ||:::..:::..|.|.|..||
plant   154 ECRKLKVRHFILIFASSQFVLSLLKNFNSISGVSLVAAVMSMSYSTIAWVASLTKGVANNVEYGY 218

  Fly   308 CLLQIGDWGWSKVRFSIDMENFPI----SLGVIVFSYTS-------QIFLPTLEGNMIDRSKFNW 361
                       |.|   :..:.|:    :||.:.|:|..       |..:|:...|...|..   
plant   219 -----------KRR---NNTSVPLAFLGALGEMAFAYAGHNVVLEIQATIPSTPENPSKRPM--- 266

  Fly   362 MLDWSHIAAAVFKAGFGY-----ICFLTFQNDTQQVITNNLHSQGFKGMV---NFFLVIKALLS- 417
               |.....|.....|.|     :.|.||.|:.::.|...|  :|.||::   |.|::|..:.| 
plant   267 ---WKGAIVAYIIVAFCYFPVALVGFWTFGNNVEENILKTL--RGPKGLIIVANIFVIIHLMGSY 326

  Fly   418 --YPLPYYAACE--LLERNFFRGPPKTKFPTIWNLDGELKVWGLGFRVGVIVSTILMAIFIPHFS 478
              |.:|.:...|  ::::..|......:|...|..               :.:|:.:|:.:||||
plant   327 QVYAMPVFDMIESVMIKKWHFSPTRVLRFTIRWTF---------------VAATMGIAVALPHFS 376

  Fly   479 ILMGFIGSFTGTMLSFIWPCYFHIKIKGHLLDQKEIAKDYLIIGLGVLFGVIGIYDSGNALINAF 543
            .|:.|.|.|.....::..||...:.:|...........:::.|.||||..:|........|:||.
plant   377 ALLSFFGGFIFAPTTYFIPCIIWLILKKPKRFSLSWCINWICIILGVLVMIIAPIGGLAKLMNAL 441

  Fly   544 E 544
            :
plant   442 K 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VGATNP_610938.1 SLC5-6-like_sbd 144..533 CDD:382020 100/443 (23%)
AT1G61270NP_176322.1 Aa_trans 34..432 CDD:279788 100/444 (23%)
SdaC 49..429 CDD:223884 94/431 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D570025at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR48017
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X361
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.920

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