DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment VGAT and AT1G25530

DIOPT Version :9

Sequence 1:NP_610938.1 Gene:VGAT / 36574 FlyBaseID:FBgn0033911 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_173924.1 Gene:AT1G25530 / 839139 AraportID:AT1G25530 Length:440 Species:Arabidopsis thaliana


Alignment Length:430 Identity:96/430 - (22%)
Similarity:165/430 - (38%) Gaps:95/430 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   146 AAWNVTNAIQGMFIVSLPFAVLHGGYWA----IVAMV-GIAHICCYTGKVLVQCLYEPDPATGQM 205
            :.::...|:.|..::|||:|:.:.| |.    ::||. |:.   ..|...:|| |:|..|.|.  
plant    35 STFHTVTAMIGAGVLSLPYAMAYLG-WGPGTFVLAMTWGLT---LNTMWQMVQ-LHECVPGTR-- 92

  Fly   206 VRVRDSYVAIAKVCFGPKLGARAVSIAQLIELLMTCILYVVVCGDLL---------AGTYPQGSF 261
               .|.|:.:.:..||||||...|...|||..:...|:|:|..|..|         ..|..:.|:
plant    93 ---FDRYIDLGRYAFGPKLGPWIVLPQQLIVQVGCNIVYMVTGGKCLKQFVEITCSTCTPVRQSY 154

  Fly   262 DSRSWML-FVGIFLLPMGFLKSLKMVSTLSFWCTMSHIVINAVILGYCLLQIGDWGWS------- 318
                |:| |.|:..:          :|.|..:.:::.:.:.|.::..|...|. ||.|       
plant   155 ----WILGFGGVHFI----------LSQLPNFNSVAGVSLAAAVMSLCYSTIA-WGGSIAHGRVP 204

  Fly   319 KVRFSIDMEN-----FPI--SLGVIVFSYTSQIFLPTLEGNMIDR----SKF-NWM-LDWSHIAA 370
            .|.:.....|     |.:  :||.|.|::........::..|...    ||. .|. :..:::..
plant   205 DVSYDYKATNPGDFTFRVFNALGQISFAFAGHAVALEIQATMPSTPERPSKVPMWQGVIGAYVVN 269

  Fly   371 AVFKAGFGYICFLTFQNDTQQVITNNLHSQGFK-GMVNFFLVIKALLSYPLPYYAACELLERNFF 434
            ||.......||:..|..|....:..||....:. ...|..:|:..:.||.:......:||||   
plant   270 AVCYFPVALICYWAFGQDVDDNVLMNLQRPAWLIAAANLMVVVHVIGSYQVFAMPVFDLLER--- 331

  Fly   435 RGPPKTKFPTIWNLDGELKVWGLGFRVGVIVS----------TILMAIFIPHFSILMGFIGSFTG 489
                             :.|...||:.||::.          |:.:.:..|.|..|:||.|.|..
plant   332 -----------------MMVNKFGFKHGVVLRFFTRTIYVAFTLFIGVSFPFFGDLLGFFGGFGF 379

  Fly   490 TMLSFIWPCYFHIKIKGHLLDQKEIAKDYLIIGLGVLFGV 529
            ...||..|....:.||    ..:..:..:.:..:.::.||
plant   380 APTSFFLPSIMWLIIK----KPRRFSVTWFVNWISIIVGV 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VGATNP_610938.1 SLC5-6-like_sbd 144..533 CDD:382020 96/430 (22%)
AT1G25530NP_173924.1 SLC5-6-like_sbd 28..424 CDD:382020 96/430 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D570025at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR48017
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X361
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.920

Return to query results.
Submit another query.