DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment VGAT and PROT2

DIOPT Version :9

Sequence 1:NP_610938.1 Gene:VGAT / 36574 FlyBaseID:FBgn0033911 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_191133.1 Gene:PROT2 / 824740 AraportID:AT3G55740 Length:439 Species:Arabidopsis thaliana


Alignment Length:386 Identity:80/386 - (20%)
Similarity:150/386 - (38%) Gaps:71/386 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 FQAAWNVTNAIQGMFIVSLPFAVLHGGYW--AIVAMVGIAHICCYTGKVLVQCLYEPDPATG--Q 204
            ||.|:.:|..|...:::.....|:....|  .:|.::....|..| ...|:..|:|    .|  :
plant    34 FQVAFVLTTGINSAYVLGYSGTVMVPLGWIGGVVGLILATAISLY-ANTLIAKLHE----FGGKR 93

  Fly   205 MVRVRDSYVAIAKVCFGPKLGARAVSIAQLIELLMTCILYVVVCGDLLAGTYPQGSFDSRSWMLF 269
            .:|.||    :|...:|.|: .|.....|.:.|.|....::::.|..|...|.....||   ::.
plant    94 HIRYRD----LAGFIYGKKM-YRVTWGLQYVNLFMINCGFIILAGSALKAVYVLFRDDS---LMK 150

  Fly   270 VGIFLLPMG-----FLKSLKMVSTLSFWCTMSHIVINAVILGYCLLQIGDWGWSKVRFSIDMENF 329
            :..|:...|     |...:..:|.|..|..:|.|:....|:...:|...| |.:|.....:::..
plant   151 LPHFIAIAGVVCAIFAIGIPHLSALGIWLGVSTILSIIYIIVAIVLSAKD-GVNKPERDYNIQGS 214

  Fly   330 PI--------SLGVIVFSYTSQIFLPTLEG--------NMIDRSKFNWMLDWSHIAAAVFKAGFG 378
            .|        :...:||::.:.: ||.::.        ||:....|.:.:....:.|..|     
plant   215 SINKLFTITGAAANLVFAFNTGM-LPEIQATVKQPVVKNMMKALYFQFTVGVLPMYAVTF----- 273

  Fly   379 YICFLTFQNDTQQVITNNLHSQGF-KGMVNFFLVIKALLSYPLPYYAACELLERNFFRGPPKTKF 442
             |.:..:.:.|...:.|::....: |.:.|....:::::|.             :.|..|.....
plant   274 -IGYWAYGSSTSTYLLNSVSGPVWVKALANISAFLQSVISL-------------HIFASPTYEYM 324

  Fly   443 PTIWNLDGE-LKVWGLGFRV-----GVIVSTILMAI--FIPHFSILMGFIGSFTGTMLSFI 495
            .|.:.:.|. |.:..|.||.     .:.|||:|.|:  |:..|..|.|.|.:|.   |:||
plant   325 DTKYGVKGSPLAMKNLLFRTVARGSYIAVSTLLSALLPFLGDFMSLTGAISTFP---LTFI 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VGATNP_610938.1 SLC5-6-like_sbd 144..533 CDD:382020 80/386 (21%)
PROT2NP_191133.1 SLC5-6-like_sbd 32..425 CDD:382020 80/386 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D570025at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR48017
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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