DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment VGAT and AT2G39130

DIOPT Version :10

Sequence 1:NP_610938.1 Gene:VGAT / 36574 FlyBaseID:FBgn0033911 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_850312.1 Gene:AT2G39130 / 818499 AraportID:AT2G39130 Length:550 Species:Arabidopsis thaliana


Alignment Length:436 Identity:104/436 - (23%)
Similarity:185/436 - (42%) Gaps:40/436 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 RQGSIASEGSSFVCEGEGGGGCKIDEFQAAWNVTNAIQGMFIVSLPFAVLHGGYWAIVAMVGIAH 182
            |:||:..:..|.:...|..........||..|..|.:.|:.|:|.|:|...||:..::.:.....
plant   137 RRGSMRKDEKSSMVSHEIPMSRNSSYGQAVLNGLNVLCGVGILSTPYAAKEGGWLGLMILFVYGL 201

  Fly   183 ICCYTGKVLVQCL-YEPDPATGQMVRVRDSYVAIAKVCFGPKLGARAVSIAQLIELLMTCILYVV 246
            :..|||.:|..|| .|.|         .::|..|.:..|| ..|...|||...:||...|:.|::
plant   202 LSFYTGILLRYCLDSESD---------LETYPDIGQAAFG-TTGRIFVSIVLYLELYACCVEYII 256

  Fly   247 VCGDLLAGTYPQ-----GSF--DSRS-WMLFVGIFLLPMGFLKSLKMVSTLSFWCTMSHIVINAV 303
            :..|.|:..||.     |.|  |:|. :.|...:.:||..:|:.|.::|.:|     :..||.:|
plant   257 LESDNLSSLYPNAALSIGGFQLDARHLFALLTTLAVLPTVWLRDLSVLSYIS-----AGGVIASV 316

  Fly   304 ILGYCLLQIG---DWGWSKVRFSIDMENFPISLGVIVFSYTSQIFLPTLEGNMIDRSKFNWMLDW 365
            ::..||..||   :.|......::::...|:::|:..:.|:.....|.:..:|...|::..:|..
plant   317 LVVLCLFWIGLVDEVGIHSKGTTLNLSTLPVAIGLYGYCYSGHAVFPNIYTSMAKPSQYPAVLLT 381

  Fly   366 SHIAAAVFKAGFGYICFLTFQNDTQQVITNNLHSQGFKGMVNFF-LVIKALLSYPLPYYAACELL 429
            ......:..||...:.:..|...||...|.||........:..: .|:.....|.|........|
plant   382 CFGICTLMYAGVAVMGYTMFGESTQSQFTLNLPQDLIATKIAVWTTVVNPFTKYALTISPVAMSL 446

  Fly   430 ERNFFRGPPKTKFPTIWNLDGELKVWGLGFRVGVIVSTILMAIFIPHFSILMGFIGSFTGTMLSF 494
            |...    |.....:.|        :.:|.|..::.||:|:.:.||.|.::|..|||....:::.
plant   447 EELI----PSRHIRSHW--------YAIGIRTLLVFSTLLVGLAIPFFGLVMSLIGSLLTMLVTL 499

  Fly   495 IWPCYFHIKIKGHLLDQKEIAKDYLIIGLGVLFGVIGIYDSGNALI 540
            |.|....:.|....:...::....|||.:|.:..|||.|.:.:.::
plant   500 ILPPACFLSIVRRKVTPTQMMLCVLIIIVGAISSVIGSYSALSKIV 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VGATNP_610938.1 SLC5-6-like_sbd 144..533 CDD:444915 98/401 (24%)
AT2G39130NP_850312.1 SLC5-6-like_sbd 158..538 CDD:444915 98/406 (24%)

Return to query results.
Submit another query.