DRSC/TRiP Functional Genomics Resources

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Protein Alignment VGAT and Slc38a4

DIOPT Version :9

Sequence 1:NP_610938.1 Gene:VGAT / 36574 FlyBaseID:FBgn0033911 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_001344987.1 Gene:Slc38a4 / 69354 MGIID:1916604 Length:547 Species:Mus musculus


Alignment Length:607 Identity:117/607 - (19%)
Similarity:208/607 - (34%) Gaps:222/607 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 GMDGGDTTEMSS---NPFRNAGSWTNDGEGGGDGDGEYRNEYQ--STSFNEYDGRYQQTDGFRQG 120
            ||:..|...|:|   |....:..:..:|..|.....:|.:|:.  .|||.               
Mouse    29 GMENSDKDAMNSQFANEDAESQKFLTNGFLGKKKLADYADEHHPGMTSFG--------------- 78

  Fly   121 SIASEGSSFVCEGEGGGGCKIDEFQAAWNVTNAIQGMFIVSLPFAVLHGG-YWAIVAMVGIAHIC 184
                                    .:::|::|||.|..|:.|.:|:.:.| ...|:.::.:|.:.
Mouse    79 ------------------------MSSFNLSNAIMGSGILGLSYAMANTGIILFIIMLLTVAILS 119

  Fly   185 CYTGKVLVQCLYEPDPATGQMVRVRDSYVAIAKVCFG--PKLGARAVSIAQLIELLMTCILYVVV 247
            .|:..:|::...|    .|.::     |..:.:..||  .|:|| .:||.......|:..|:::.
Mouse   120 LYSVHLLLKTAKE----GGSLI-----YEKLGEKAFGWPGKIGA-FISITMQNIGAMSSYLFIIK 174

  Fly   248 ----------------CGD-LLAGTYPQGSFDSRSWMLFVGI-FLLPMGFLKSLKMVSTLSFWCT 294
                            .|: .|.|.|         .:|||.: .:||:..||:|..:...|.:..
Mouse   175 YELPEVIRAFMGLEENTGEWYLNGNY---------LVLFVSVGIILPLSLLKNLGYLGYTSGFSL 230

  Fly   295 MSHIVINAVILGYCLLQIGDWGWSKVRFSIDMENFPISLGVIVFSYTSQIFLPTLEGNMIDRSKF 359
            ...:...:|::           :.|.:....:.....:.|.:.|:.|..|.:.:|. |..:.|..
Mouse   231 SCMVFFVSVVI-----------YKKFQIPCPLPALDHNNGNLTFNNTLPIHMISLP-NDSESSGV 283

  Fly   360 NWMLDWSHIAAAVFKAGFGYICFLTFQNDTQQVITNNLHSQGF--------KGMVNFFLVIKALL 416
            |:|:|::|...|..              |.:|| ...|||.|.        |....:| |..:..
Mouse   284 NFMMDYAHHNPAGL--------------DEKQV-AGPLHSNGVEYEAQGAEKCQPKYF-VFNSRT 332

  Fly   417 SYPLPYYA---AC---------ELLERNFFRGPPKTKFPTIWNLD--------------GELKVW 455
            :|.:|..|   .|         ||.:|:      :.|..|:.|:.              |.|..:
Mouse   333 AYAIPILAFAFVCHPEVLPIYSELKDRS------RRKMQTVSNISISGMLVMYLLAALFGYLSFY 391

  Fly   456 G--------------------LGFRVGVIVSTIL------------------------------- 469
            |                    |..|:.|:|:..|                               
Mouse   392 GDVEDELLHAYSKVYTFDTALLMVRLAVLVAVTLTVPIVLFPIRTSVITLLFPRKPFSWLKHFGI 456

  Fly   470 ----------MAIFIPHFSILMGFIGSFTGTMLSFIWPCYFHIKI--KGHLLDQKEI-AKDYLII 521
                      :.|.:|....:.||||:.:.|||.||.|..|::|:  |..|...::| |..:|:.
Mouse   457 AAIIIALNNILVILVPTIKYIFGFIGASSATMLIFILPAAFYLKLVKKEPLRSPQKIGALVFLVT 521

  Fly   522 GLGVLFGVIG------IYDSGN 537
            |:..:.|.:.      ||:..|
Mouse   522 GIIFMMGSMALIILDWIYNPPN 543

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VGATNP_610938.1 SLC5-6-like_sbd 144..533 CDD:382020 101/513 (20%)
Slc38a4NP_001344987.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..34 2/4 (50%)
SLC5-6-like_sbd 75..535 CDD:382020 104/551 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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