DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment VGAT and Slc38a2

DIOPT Version :9

Sequence 1:NP_610938.1 Gene:VGAT / 36574 FlyBaseID:FBgn0033911 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_780330.2 Gene:Slc38a2 / 67760 MGIID:1915010 Length:504 Species:Mus musculus


Alignment Length:537 Identity:110/537 - (20%)
Similarity:189/537 - (35%) Gaps:160/537 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 EYRNEYQSTS-FNEYDGRYQQTDGFRQGSIASEGSSFVCEGEGGGGCKIDEF--------QAAWN 149
            |..:.|.|.| ||......|.........:..|..:|:.|...|......:|        .:.:|
Mouse    15 EDSSSYSSNSDFNYSYPTKQAALKSHYADVDPENQNFLLESNLGKKKYETDFHPGTTSFGMSVFN 79

  Fly   150 VTNAIQGMFIVSLPFAVLHGG---YWAIVAMVGI-----AHICCYTGKVLVQCLYE--------- 197
            ::|||.|..|:.|.:|:.:.|   :..::..|.|     .|:...|.......|||         
Mouse    80 LSNAIVGSGILGLSYAMANTGIALFIILLTFVSIFSLYSVHLLLKTANEGGSLLYEQLGHKAYGL 144

  Fly   198 ------PDPATGQMVRVRDSYVAIAKVCFGPKLGARAVSIAQLIELLMTC-----ILYVVVCGDL 251
                  ....|.|.:....||:.|.|           ..:..:|:.||..     :.|  :.||.
Mouse   145 AGKLAASGSITMQNIGAMSSYLFIVK-----------YELPLVIKALMNIEDTNGLWY--LNGDY 196

  Fly   252 LAGTYPQGSFDSRSWMLFVGIFLLPMGFLKSLKMV---STLSFWCTMSHIVI------------- 300
            |.             :|...:.:||:..|::|..:   |.||..|.:..:::             
Mouse   197 LV-------------LLVSLVLILPLSLLRNLGYLGYTSGLSLLCMIFFLIVVICKKFQIPCPVE 248

  Fly   301 -----NAVILG-----------------YCLLQIGDWGWSKVRFSIDMENFPISLGVIVFSYTSQ 343
                 |..:.|                 .|          :.|:.|.......::.::.||:...
Mouse   249 AALVANETVNGTFTQAALALAFNSTADDAC----------RPRYFIFNSQTVYAVPILTFSFVCH 303

  Fly   344 -IFLPTLE-------GNMIDRSKFNWM-LDWSHIAAAVFKAGFGYICFLTFQNDTQQVITNNLHS 399
             ..||..|       ..|::.||.::. :...::.||:    |||   |||....:..:   ||:
Mouse   304 PAVLPIYEELKSRSRRRMMNVSKISFFAMFLMYLLAAL----FGY---LTFYGHVESEL---LHT 358

  Fly   400 QG-FKG------MVNFFLVIKALLSYPLPYY----AACELLERNFFRGPPKTKFPTIWNLDGELK 453
            .. ..|      :|...:::...|:.|:..:    :...||       .|..:|.  |.....:.
Mouse   359 YSEIVGTDILLLVVRLAVLVAVTLTVPVVIFPIRSSVTHLL-------CPTKEFS--WLRHSIIT 414

  Fly   454 VWGLGFRVGVIVSTILMAIFIPHFSILMGFIGSFTGTMLSFIWPCYFHIKI--KGHLLDQKEI-A 515
            |..|.|       |.|:.||:|....:.||||:....||.||.|..|:||:  |..:...::| |
Mouse   415 VTILSF-------TNLLVIFVPTIRDIFGFIGASAAAMLIFILPSAFYIKLVKKEPMRSVQKIGA 472

  Fly   516 KDYLIIGLGVLFGVIGI 532
            ..:|:.|:.|:.|.:|:
Mouse   473 LCFLLSGIVVMIGSMGL 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VGATNP_610938.1 SLC5-6-like_sbd 144..533 CDD:382020 99/486 (20%)
Slc38a2NP_780330.2 Regulates protein turnover upon amino acid deprivation. /evidence=ECO:0000250 1..96 19/80 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23 2/7 (29%)
SLC5-6-like_sbd 69..491 CDD:382020 98/483 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167848937
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

Return to query results.
Submit another query.