DRSC/TRiP Functional Genomics Resources

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Protein Alignment VGAT and slc38a2

DIOPT Version :9

Sequence 1:NP_610938.1 Gene:VGAT / 36574 FlyBaseID:FBgn0033911 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_001038569.1 Gene:slc38a2 / 566537 ZFINID:ZDB-GENE-030131-9659 Length:504 Species:Danio rerio


Alignment Length:513 Identity:117/513 - (22%)
Similarity:193/513 - (37%) Gaps:129/513 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 STSFNEYDGRYQQ------TDGFRQGSIASEGSSFVCE--------------GEGGGGCKIDEFQ 145
            ||:.|||. .||.      .:|.:...:.:|..:|:.:              |....|..:    
Zfish    21 STNSNEYT-NYQDHASKVPLNGIQYSDVEAESQNFLSDHHLGKKKYEAEYSPGSASFGMSV---- 80

  Fly   146 AAWNVTNAIQGMFIVSLPFAVLHGGY-WAIVAMVGIAHICCYTGKVLVQCLYEPDPATGQMVRVR 209
              :|:.|||.|..|:.|.:|:.:.|. ..::.:|.:|....|:..:|::...|    .|.:|   
Zfish    81 --FNLGNAIMGSGILGLSYAMANTGIAMFVILLVAVAIFSLYSVHLLLKTANE----GGSLV--- 136

  Fly   210 DSYVAIAKVCFG-PKLGARAVSIAQLIELLMTCILYVV------VCGDLLAGT----YPQGSFDS 263
              |..:....|| |...|.:.||.......|...||:|      |....|...    |..|.:  
Zfish   137 --YEQLGYKAFGIPGKLAASCSITMQNFGAMASYLYIVKYELPIVIRAFLDSNDNAWYTNGDY-- 197

  Fly   264 RSWMLFVGI-FLLPMGFLKSLKMV---STLSFWCTMSHIVINAVILGYCLLQI------------ 312
              .:|.|.: .:||:..||:|..:   |..|..|    :|...:::.|...||            
Zfish   198 --LVLIVTMSIILPLSLLKNLGYLGYTSGFSLLC----MVFFLIVVIYKKFQIPCPLPENFINIT 256

  Fly   313 ------------GDWGWSKVRFSIDMENFPISLGVIVFSYTSQ-IFLPTLEGNMIDRS--KFNWM 362
                        .|....|.::.|.......::.::.|::... ..||..| .:.|||  |...:
Zfish   257 VNVSQPPQTNNSTDEECCKPKYFIFNSQTVYAVPILTFAFVCHPAILPMYE-ELKDRSRRKMQNV 320

  Fly   363 LDWSHIAAAV---FKAGFGYICFLTFQNDTQQVITNNLHSQGFKGMVNFFLVIKALLSYPLPYYA 424
            .:.|.:...:   ..|.|||:.|      .:.|....||:  :..:.||.:|   ||...|....
Zfish   321 ANVSFLGMFIMYLLAALFGYLTF------NEAVEPELLHT--YSKVYNFDVV---LLIVRLAVLT 374

  Fly   425 ACELLERNFFRGPPKTKFP---TIWNLDGELKVWG----LGFRVGVIVSTILMAIFIPHFSILMG 482
            |..|.       .|...||   ::.:|.|..|.:.    :...|.::|...::.||:|....:.|
Zfish   375 AVTLT-------VPVVLFPIRTSVNHLLGASKEFSWPRHICITVALLVCVNILVIFVPTIRDIFG 432

  Fly   483 FIGSFTGTMLSFIWPCYFHIKIKGHLLDQKEIAKD--------YLIIGLGVLFGVIGI 532
            |||:....||.||.|..|:||     |.:||..|.        :||:|..|:.|.:.:
Zfish   433 FIGASAAAMLIFILPSAFYIK-----LVKKESMKSVQKIGATLFLIMGFLVMTGSMAL 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VGATNP_610938.1 SLC5-6-like_sbd 144..533 CDD:382020 105/450 (23%)
slc38a2NP_001038569.1 Regulates protein turnover upon amino acid deprivation. /evidence=ECO:0000250 1..99 19/84 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..28 4/6 (67%)
SdaC 70..479 CDD:223884 105/455 (23%)
SLC5-6-like_sbd 72..488 CDD:294310 107/461 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170594489
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

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