DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment VGAT and slc38a7

DIOPT Version :9

Sequence 1:NP_610938.1 Gene:VGAT / 36574 FlyBaseID:FBgn0033911 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_001003648.1 Gene:slc38a7 / 445254 ZFINID:ZDB-GENE-040801-266 Length:465 Species:Danio rerio


Alignment Length:528 Identity:113/528 - (21%)
Similarity:187/528 - (35%) Gaps:133/528 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 SNPFR----NAGSWTNDGEGGGDGDGEYRNEYQSTSFNEYDGRYQQTDGFRQGSIASEGSSFVCE 132
            |.|.|    .||.|     |..:..||.....||.|.:......|..|.  :|..:|.|:.|:  
Zfish     2 SRPDRAINSEAGDW-----GYSEDAGERAWLLQSPSVDSVQPPSQSDDS--RGGTSSLGAVFI-- 57

  Fly   133 GEGGGGCKIDEFQAAWNVTNAIQGMFIVSLPFAV-LHGGYWAIVAMVGIAHICCYTGKV-LVQCL 195
                             |.||..|..:::.|.|. :.||..|.|.:.........||.| |..|.
Zfish    58 -----------------VVNAALGAGLLNFPAAFNMAGGITAGVTLQMCMMAFIITGLVILAYCS 105

  Fly   196 YEPDPATGQMVRVRDSYVAIAKVCFGPKLGARAVSIAQLIELLMTCILYVVVCGDLLAGTYPQGS 260
            ...:.:|.|.|        :..|| |..||. ...:|..:....|||.::::.||.|....  |:
Zfish   106 QVSNESTYQEV--------VRAVC-GKALGV-ICELAIAVYTFGTCIAFLIIIGDQLDKLI--GA 158

  Fly   261 FDSRS-------W--------MLFVGIFLLPMGFLKSL---KMVSTLSFWCTMSHIVINAVILGY 307
            .::.|       |        .|...:.:||:...|.:   |..||||...|....:|  ||:.|
Zfish   159 INNESEKEISLHWYTDRKFTITLTSVLIILPLSIPKEIGFQKYASTLSVIGTWYVTII--VIVKY 221

  Fly   308 C---------LLQIGDWGWSKVRFSIDMENFPISLGVIVFSYTSQIFLPTLEGNMIDRSKFNWML 363
            .         ::.:....|:      |:.|   ::..|.|.:...:....:..:|.......|  
Zfish   222 IWPSKDVSPGIIPVRPASWT------DVFN---AMPTICFGFQCHVSSVPVFNSMKKPEIRPW-- 275

  Fly   364 DWSHIAAAVFKAGFGY----IC-FLTFQNDTQQVITNNLHSQGFK-GMVNFFLVIKALLSYPLPY 422
             |..:..::....|.|    :| ||:|.:...|.:..:..|.... .:...|::|..:.|||:.:
Zfish   276 -WGVVTISMIICLFVYTGTGVCGFLSFGSSVSQDVLMSYPSDDVAVAIARAFIIICVVTSYPILH 339

  Fly   423 YAACELLERNFFRGPPKTKFPTIWNLDGE----------------LKVWGLGFRVGVIVSTILMA 471
            :....:||..:.|            ..||                ..||        ...|:::|
Zfish   340 FCGRAVLEGLWLR------------FKGEEVETDVAKERRRRILQTLVW--------FCLTLILA 384

  Fly   472 IFIPHFSILMGFIGSFTGTMLSFIWP--CYFHIKIKGHLLDQKEIAKDYLIIGLGVLFGVIGIYD 534
            :|||....::..||......: |::|  |....|:..|  |.:..:.: .::..||:...||.:.
Zfish   385 LFIPDIGRVISLIGGLAACFI-FVFPGLCLIQAKLSEH--DVRSNSWN-AMVAYGVIMVTIGAFI 445

  Fly   535 SGNALINA 542
            .|....||
Zfish   446 FGQTTTNA 453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VGATNP_610938.1 SLC5-6-like_sbd 144..533 CDD:382020 92/441 (21%)
slc38a7NP_001003648.1 SLC5-6-like_sbd 47..454 CDD:294310 99/476 (21%)
SdaC 47..446 CDD:223884 96/467 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170594488
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

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