DRSC/TRiP Functional Genomics Resources

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Protein Alignment VGAT and polyph

DIOPT Version :9

Sequence 1:NP_610938.1 Gene:VGAT / 36574 FlyBaseID:FBgn0033911 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_610631.1 Gene:polyph / 36161 FlyBaseID:FBgn0033572 Length:460 Species:Drosophila melanogaster


Alignment Length:445 Identity:88/445 - (19%)
Similarity:179/445 - (40%) Gaps:87/445 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   149 NVTNAIQGMFIVSLPFAVLHGGY-----WAIVAMVGIA---HI-------CCYTGKVLVQCLYEP 198
            ::...:.|..|:::|.|....|:     .:|:.|:.:.   |:       ||...:|        
  Fly    54 SLLKCVIGTGILAMPLAFRCSGFVMGTVMSILLMILLTYSIHLLIADMTECCRRRRV-------- 110

  Fly   199 DPATGQMVRVRDSYVAIAK--VCFGPKLGARAVSIAQLIELLMTCILYVVV-------CGDLLAG 254
             |.......||.:|....|  .|||...|.....:....:.|: |.:|:|.       .||....
  Fly   111 -PQVSMPEAVRIAYEEGPKWINCFGRAAGFMTTCVLVFGQFLL-CTVYLVFVSKNFKEIGDHYIE 173

  Fly   255 TYPQGSFDSRSWMLFVGIFLLPMGFLKSLKMVSTLSFWCTMSHIVINAVILGYCLL--------- 310
            .|     :.|.::|...:.|||:..::.||.:..|:.   :|:.::.|   |:.|:         
  Fly   174 RY-----NERYYVLVACLLLLPLFMIRRLKYLVPLNL---ISNFLLYA---GFALIMYYLFNGLP 227

  Fly   311 QIGDWGWSKVRFSIDMENFPIS----LGVIVFSYTSQIFLPTLEGNMIDRSKFNWMLDWSHIAAA 371
            .|.|         .:|...|:.    :.:..||.|:...:..:|.:|.....:..:....::|..
  Fly   228 NIND---------REMVTPPVEWIEFIAIAAFSLTAVGSMLVVEAHMAHPQSYLGLFGVLNLAVL 283

  Fly   372 VFKAG---FGYICFLTFQNDTQQVITNNL-HSQGFKGMVNFFLVIKALLSYPLPYYAACELLERN 432
            .....   ||.|.:..|.::....||.|: ..:.....:..|:.....|||||..:....::..:
  Fly   284 FILLSNMFFGIIGYWRFGDNVHASITLNIPQDEILSQFIKVFIASGIFLSYPLNGFVVITVMFSD 348

  Fly   433 FFRGPPKTKFPTIWNLDGELKVWGLGFRVGVIVSTILMAIFIPHFSILMGFIGSFTGTMLSFIWP 497
            :....|:.::.|:  ::..:::..| |..|.:      ||.:|:.:.|....|:|:.:.|:.:.|
  Fly   349 YENSEPRGRYRTL--IEYVVRLLFL-FLTGAV------AIGVPNLAALTELEGAFSLSNLNLLCP 404

  Fly   498 CYFHIKIK-----GHLLDQKEIAKDYLIIGLGVLFGVIGIYDSGNALINAFEIGL 547
            ....:.:.     |.|:  .::.:|.|:|.:|::||::|...:...||..|::.|
  Fly   405 ALIDVFLNYNVGYGRLM--WKLIRDILLILIGLIFGIVGCTVALMQLIRDFQLTL 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VGATNP_610938.1 SLC5-6-like_sbd 144..533 CDD:382020 84/429 (20%)
polyphNP_610631.1 SLC5-6-like_sbd 50..407 CDD:320982 75/391 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45468281
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0814
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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