DRSC/TRiP Functional Genomics Resources

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Protein Alignment VGAT and slc38a6

DIOPT Version :9

Sequence 1:NP_610938.1 Gene:VGAT / 36574 FlyBaseID:FBgn0033911 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_001018308.1 Gene:slc38a6 / 336741 ZFINID:ZDB-GENE-050522-51 Length:449 Species:Danio rerio


Alignment Length:493 Identity:99/493 - (20%)
Similarity:187/493 - (37%) Gaps:101/493 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 GEGGGDGDGEYRNEYQSTSFNEYDGRYQQTDGFRQGSIASEGSSFVCEGEGGGGCKIDEFQAAWN 149
            |..|.:...:..:||:....:|     ::|....|| :.:.||||:              .:|:|
Zfish     2 GRNGANHSIQTVSEYEPIGEDE-----ERTPLLPQG-VQTRGSSFM--------------SSAFN 46

  Fly   150 VTNAIQGMFIVSLPFAVLHGGYWAI-VAMVGIAHICCYT-GKVLVQC------LYEPDPATGQMV 206
            :.|||.|..|:.|.:|:.:.|.... :.::.:|.:..|: ..:|:.|      .||   |.|:..
Zfish    47 LMNAIMGSGILGLSYAMANTGTVGFSILLLMVASLAAYSIHLLLLLCDKTGINSYE---ALGEKA 108

  Fly   207 RVRDSYVAIAKVCFGPKLGARAVSIAQLIELLMTCILYVVVCGDLLAGTYPQGSFDSRSW----- 266
            ..|...:.:|.......:||    ::..:.:|.|.:...::      |.....|..|..|     
Zfish   109 LNRPGKILVACTILIQNIGA----MSSYLFILKTELPAAII------GFMRSDSETSGKWFENGV 163

  Fly   267 ---MLFVGIFLLP---------MGFLKSLKMVSTLSF--------WCTMSHIVINAVI-----LG 306
               :|...|.:||         :|:..|:..:..|.|        |.....:.||:.:     ..
Zfish   164 TLLILVTVIIVLPLALLPKIGFLGYTSSIAFLFMLFFTVVVVVKKWSIPCPLPINSTLSLSLNTS 228

  Fly   307 YCLLQIGDWGWSKVRFSIDMENFPISLGVIVFSYTSQIFLPTLEGNMIDRSKFNWMLDWSHIAAA 371
            .|..|:.... ||..:::....|.......||....::..|| :..|...:..:..|.:   ...
Zfish   229 ECTAQLFVIS-SKSAYAVPTMAFSFLCHTAVFPIYCELHRPT-KRRMQRATNVSIFLSF---VVY 288

  Fly   372 VFKAGFGYICFLTFQNDTQQVITNNLHSQGFKGM-VNFFLVIKALLSYPLPYYAACELL------ 429
            :..|.|||:.|.:.......:..|....:....| |...:::..||:.||.::.|.:.:      
Zfish   289 LISALFGYLTFYSHVGSELLLAYNTYLPRDILVMSVRLAILLAVLLTVPLIHFPARKAVLMLCRG 353

  Fly   430 ERNFFRGPPKTKFPTIWNLDGELKVWGLGFRVGVIVSTILMAIFIPHFSILMGFIGSFTGTMLSF 494
            ||.|           .| |...|..:      .::...:|:|||:|....:.|.:||.|.|.|.|
Zfish   354 EREF-----------SW-LSHTLSCF------FILTLVLLLAIFVPDIKNVFGVVGSTTSTCLLF 400

  Fly   495 IWPCYFHIKIKGHLLDQKEIAKDYLIIGLGVLFGVIGI 532
            ::|..|.::|....:..........::.:|::.||:.:
Zfish   401 VYPGMFFLRISSEPIRSFNSVGAVFLLVIGLVVGVLSL 438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VGATNP_610938.1 SLC5-6-like_sbd 144..533 CDD:382020 87/434 (20%)
slc38a6NP_001018308.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..25 5/27 (19%)
SLC5-6-like_sbd 36..443 CDD:294310 91/453 (20%)
SdaC 37..442 CDD:223884 91/452 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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