DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment VGAT and Slc38a9

DIOPT Version :9

Sequence 1:NP_610938.1 Gene:VGAT / 36574 FlyBaseID:FBgn0033911 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_848861.1 Gene:Slc38a9 / 268706 MGIID:1918839 Length:560 Species:Mus musculus


Alignment Length:501 Identity:94/501 - (18%)
Similarity:181/501 - (36%) Gaps:147/501 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 GSSFVCEGEGGGGCKIDEFQAAWNVTNAIQGMFIVSLPFAVLHGGY---WAIVAMVGIAHI-CCY 186
            ||::..:....|..|.......:.:.|.:.|..|:|:|:.:...|:   ..::.::|:..: |||
Mouse   101 GSAYKLKSYTEGYGKNTSLVTIFMIWNTMMGTSILSIPWGIKQAGFTTGMCVIVLMGLLTLYCCY 165

  Fly   187 TGKVLVQCLYEPDPATGQMVRVRDSYVAIAKVCFGPKLGARAVSIAQLIELLMTCILYVVVCGDL 251
            ........:...|.:|.:       |..:.|..|| ..|..:..:..|:.|:...|:|.|:..:.
Mouse   166 RVVKSRSTISTSDTSTWE-------YPDVCKHYFG-SFGQWSSLLFSLVSLIGAMIVYWVLMSNF 222

  Fly   252 LAGTYPQGSF----------------------------------DSRSWMLF------------- 269
            |..|   |.|                                  |:.|.:.:             
Mouse   223 LFNT---GKFIFNFIHHINDTDTVLSTNNSNPVICPNAGSGGRPDNSSMIFYNNNTEVQLFEKWW 284

  Fly   270 ----------VGIFLLPM------GFLKSLKMVSTLSFWCTMSHIVINAVILGYCLLQIGDWGW- 317
                      :|: |||:      .|.....::.|:|....:..:.:.||.||:.|    ::.| 
Mouse   285 DKSRTVPFYLIGL-LLPLLNFKSPSFFSKFNILGTVSVLYLIFVVTLKAVRLGFHL----EFHWF 344

  Fly   318 -------SKVRFSIDMENFPISLGVIVFSYTSQIFLPTLEGNMIDRSKFNWMLDWSHIAAAVFKA 375
                   .::|     ..||..:||:..::.....:.||..|  ::::.|.:.|.. ||..:...
Mouse   345 VPTEFFVPEIR-----AQFPQLMGVLTLAFFIHNCIITLLKN--NKNQENNVRDLC-IAYMLVTL 401

  Fly   376 GFGYICFLTFQNDTQQVITNNLHSQGFKGMVNF------------FLVIKALLSYP-LPYYAACE 427
            .:.||..|.|.:.....:..:...|.|  :.||            ||:.:.:..|| |.|.|..:
Mouse   402 TYLYIGILVFASFPSPPLPKDCIEQNF--LDNFPSSDILSFIARIFLLFQMMTVYPLLGYLARVQ 464

  Fly   428 LLERNFFRGPPKTKFPTIWNLDGELKVWGLGFRVGVIVSTILMAIFIPHFSILMGFIGSFTGTML 492
            ||...|     ...:|:|:::        |...:.::.:.:.||.|.|:...::.:.|:..|...
Mouse   465 LLGHIF-----GDIYPSIFHV--------LILNLVIVGAGVTMACFYPNIGGIIRYSGAACGLAF 516

  Fly   493 SFIWPCYFHI------------KIKGHLLDQKEIAKDYLIIGLGVL 526
            .||:|...:|            |:..|::        .:|:||..|
Mouse   517 VFIYPSLIYIISLHQEERLTWPKLVFHVI--------IIILGLANL 554

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VGATNP_610938.1 SLC5-6-like_sbd 144..533 CDD:382020 90/483 (19%)
Slc38a9NP_848861.1 SLC5-6-like_sbd 114..556 CDD:382020 91/488 (19%)
Important for arginine binding and amino acid transport. /evidence=ECO:0000250|UniProtKB:Q08BA4 128..133 1/4 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.