DRSC/TRiP Functional Genomics Resources

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Protein Alignment VGAT and slc-36.1

DIOPT Version :9

Sequence 1:NP_610938.1 Gene:VGAT / 36574 FlyBaseID:FBgn0033911 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_499743.2 Gene:slc-36.1 / 259544 WormBaseID:WBGene00012804 Length:455 Species:Caenorhabditis elegans


Alignment Length:511 Identity:118/511 - (23%)
Similarity:199/511 - (38%) Gaps:91/511 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 SNPFRNAGSWTNDGEGGGDGDGEYRNEYQSTSFNEYDGRYQQTDGFRQGSIASEGSSFVCEGEGG 136
            :||.|: |....|.|....||.|.:...::|        ..:.....|..:.:|.|         
 Worm     2 ANPARD-GYQEFDNEPEAPGDTEVQTPRRNT--------VSEDTSLFQDRLPTENS--------- 48

  Fly   137 GGCKIDEFQAAWNVTNAIQGMFIVSLPFAVLHGG-YWAIVAMVGIAHICCYTGKVLVQCLYEPDP 200
                :...||..::..|:.|..::|||.|..|.| :..::..|.|..||.|..:.:|...:....
 Worm    49 ----LTPEQAFIHMVKAMLGTGLLSLPLAFKHSGLFLGLILTVLICLICLYCMRQVVFAAHFVCN 109

  Fly   201 ATGQMVRVRD--SYVAIAK--VCFGPKLGAR-------AVSIAQLIELLMTCILYVVVCGDLLAG 254
            ..|     ||  .|..|.:  |..||....|       .|::...|..|..|.:|.|...|.|..
 Worm   110 RNG-----RDLIDYANIMRGAVEMGPPWIKRNGYFFKQLVNVNMFISQLGFCCVYFVFMADNLED 169

  Fly   255 TYPQGS---FDSRSWMLFVGIFLLPMGFLKSLKMVSTLSFWCTMSHIVINAVILGYCLLQ---IG 313
            .:...:   .....|||.:.|.:|.:..::.|.:::..:....:.::|..||:|.:.|..   |.
 Worm   170 FFNNNTSIHLSKAVWMLLLLIPMLSICSIRRLSILAPFAMAANVVYVVAVAVVLFFFLSDLRPIS 234

  Fly   314 DWGWSKVRFSIDMENFPISLGVIVFSYTSQIFLPTLEGNMIDRSKF---NWMLDWSHIAAAVFKA 375
            ...|    |. ...:.|:..|.::|::.....:..:|..|.....|   |.:|:.|.:......:
 Worm   235 SLPW----FG-KATDLPLFFGTVMFAFEGVAVIMPIENRMQSPHAFISWNGVLNSSCLVVLAIFS 294

  Fly   376 GFGYICFLTFQNDTQQVITNNLHSQGFKGMVNFFLVIKALLSYPLPYYAACELLERNFFRGPP-- 438
            ..|:..:|:..||.:...|.||....|...:....|...::||||.:|...|.:|:...|..|  
 Worm   295 VTGFYGYLSLGNDVKDTATLNLPMTPFYQTIKLMFVACIMISYPLQFYVPMERIEKWITRKIPVD 359

  Fly   439 -KTKFPTIWNLDGELKVWGLGFRVGVIVSTILMAIFIPHFSILMGFIGSFTGTMLSFIW-PCYFH 501
             :|.:..|....|             ::.|..:|..|||.::.:..||:|:|..::.:: ||.  
 Worm   360 KQTLYIYIARYSG-------------VILTCAIAELIPHLALFISLIGAFSGASMALLFPPCI-- 409

  Fly   502 IKIKGHLLDQKEIAKDYLIIGLGV------LFGVIGIYDSG--NALINAFEIGLPF 549
                 .||  ...||:.|..||.:      .|..|| :.:|  :|||   ||...|
 Worm   410 -----ELL--TSYAKNELSTGLWIKNIVLLTFAFIG-FTTGTYSALI---EIAKTF 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VGATNP_610938.1 SLC5-6-like_sbd 144..533 CDD:382020 98/419 (23%)
slc-36.1NP_499743.2 SLC5-6-like_sbd 50..445 CDD:382020 99/427 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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