DRSC/TRiP Functional Genomics Resources

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Protein Alignment VGAT and Slc36a2

DIOPT Version :9

Sequence 1:NP_610938.1 Gene:VGAT / 36574 FlyBaseID:FBgn0033911 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_694810.2 Gene:Slc36a2 / 246049 MGIID:1891430 Length:478 Species:Mus musculus


Alignment Length:447 Identity:104/447 - (23%)
Similarity:179/447 - (40%) Gaps:76/447 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   141 IDEFQAAWNVTNAIQGMFIVSLPFAVLHGG-YWAIVAMVGIAHICCYTGKVLVQC-------LYE 197
            |..||...::.....|..|:.||.||.:.| ....::::.:..|.|:...:||:|       |.:
Mouse    49 ITGFQTLVHLVKGNMGTGILGLPLAVKNAGILMGPLSLLVMGLIACHCMHILVRCAQRFCHRLNK 113

  Fly   198 PDPATGQMVRVRDSYVAIAKVCFGPKL--------GARAVSIAQLIELLMTCILYVVVCGDLLAG 254
            |....|..|        :..:.|.|..        |.|.||...::..|..|.:|:|...|.|..
Mouse   114 PFMDYGDTV--------MHGLAFSPNAWLQNHAHWGRRVVSFFLIVTQLGFCCVYIVFLADNLKQ 170

  Fly   255 TYP-----------------QGSFDSRSWMLFVGIFLLPMG---FLKSLKMVSTLSFWCTMSHIV 299
            ...                 ..:.|||.:||   .||..:|   |:::|::::..|....:|.:|
Mouse   171 VVEAVNSTTISCHKNETVVLTPTMDSRLYML---SFLPVLGLLVFVRNLRVLTIFSLLANISMLV 232

  Fly   300 INAVILGYCLLQIGDWGWSKVRFSIDMENFPISLGVIVFSYTS-QIFLPTLEGNMIDRSKFNWML 363
            ...:|..|.:.:|.|  .|::......:.:|:..|..:||:.| .:.|| ||..|.|...|..:|
Mouse   233 SLVIIAQYIIQEIPD--ASQLPLVASWKTYPLFFGTAIFSFESIGVVLP-LENKMKDARGFPTIL 294

  Fly   364 DWSHIAAAVFKAGFGYICFLTFQNDTQQVITNNLHSQGFKGMVNFFLVIKALLSYPLPYYAACEL 428
            ..............|.:.:|.|.:|.:..||.||.:......|....|:..|.:|.|.:|...|:
Mouse   295 SLGMSIITTLYIAIGALGYLRFGDDIKASITLNLPNCWLYQSVKLLYVVGILCTYALQFYVPAEI 359

  Fly   429 LERNFFRGPPKTKFPTI-------WNLDGELKVWGLGFRVGVIVSTILMAIFIPHFSILMGFIGS 486
            :            .|..       |.|..:|.:     |:.::..|.::||.||...:::..:||
Mouse   360 I------------IPLAVSQVSKRWALPVDLSI-----RLALVCLTCMLAILIPRLDLVLSLVGS 407

  Fly   487 FTGTMLSFIWPCYFH-IKIKGHLLDQKEIAKDYLIIGLGVLFGVIGIYDSGNALINA 542
            .:.:.|:.|.|.... :...|..:....:.||.||..||.:..|:|.|.:.:.||.:
Mouse   408 VSSSALALIIPPLLEVVTYYGEGISPLTVTKDALISILGFMGFVVGTYQALDELIKS 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VGATNP_610938.1 SLC5-6-like_sbd 144..533 CDD:382020 100/433 (23%)
Slc36a2NP_694810.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..46
SLC5-6-like_sbd 48..458 CDD:294310 102/439 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167848934
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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