DRSC/TRiP Functional Genomics Resources

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Protein Alignment VGAT and Y18D10A.23

DIOPT Version :9

Sequence 1:NP_610938.1 Gene:VGAT / 36574 FlyBaseID:FBgn0033911 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_493251.1 Gene:Y18D10A.23 / 173155 WormBaseID:WBGene00012487 Length:503 Species:Caenorhabditis elegans


Alignment Length:488 Identity:84/488 - (17%)
Similarity:175/488 - (35%) Gaps:120/488 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 SIASEGSSFVCEGEGGGGCKIDEFQAAWNVTNAIQGMFIVSLPFAVLHGGYWAIVAMVGIAHICC 185
            :::::.||......|     |....||..:...:.|..::|||.|:...|..|...::.:|.|..
 Worm    24 TVSTDSSSTYHNSHG-----ISWLMAAVFIVGDMMGAGMISLPLALGRSGLIAGCVLILLASIFS 83

  Fly   186 -YTGKVLVQCLYEPDPATGQMVRVR-DSYVAIAKVCFGPKLGARA--------VSIAQLI-ELLM 239
             |||..|.:        ..:|:::| ..|....:..: |::..||        |::..:: :.|:
 Worm    84 GYTGIQLGE--------NWEMMQIRWPKYRTHCRRPY-PEMAYRALGNWARQVVAVCLVVSQFLI 139

  Fly   240 TCILYVVVCGDL--LAGTYPQGSFDSRSWMLFVGIFLLPMGFLKSLKMVSTLSFW------CTMS 296
            .|:|.::...:.  |..|:.....|...:::.:.:.|.|...|:     |.:.||      ...|
 Worm   140 ACVLLLISAENFTNLLNTFFHLHLDFCVFIVAIALVLWPFSLLQ-----SPMDFWQLAVISAVSS 199

  Fly   297 HIVINAVILGYCLLQIGDWGW-SKVRF----SIDMENFPISLGVIVFSYTSQIFLPTLEGNMIDR 356
            .|....::.|      ..|.. |.|.:    |::.:.|.::.|.|||::......||::.:|...
 Worm   200 TIAAGLIVFG------ASWDMTSCVPYRQMPSLEAKQFTLAYGTIVFAFGGHGAFPTIQHDMAMP 258

  Fly   357 SKFNWMLDWSHIAAAVFKAGFGYICFLTFQNDTQQVITNNLHSQGFKGMVNFFLVIKALLSYPLP 421
            .:||..:..|:|...:..........:.:.:.....:..::........:|..:....|      
 Worm   259 HQFNKSVISSYILITLVYLAVSITGLIAYGDSMIDTVIPSIQLTWVAQTINILITAHIL------ 317

  Fly   422 YYAACELLERNFFRGPPKTKFPTI----WNLDGELKVW-----GLGFRVGVIVSTILMAIFIPHF 477
                                 |||    ..|..:::.|     ..|.|..::.:.||..:.....
 Worm   318 ---------------------PTIIIVLSPLSQQVEEWIKIPNQFGCRRVLVRTFILFLVMFTAL 361

  Fly   478 SIL-----MGFIGSFTGTMLSFIWPCYFHI-----------KIKGHLLDQKE------------- 513
            |:|     :..:|:.|.|:::.:.|..|.:           .:|...:.|..             
 Worm   362 SVLKLGLFLDLVGATTITLMTMLLPSIFWLFMQASAKKREDGLKAGTIQQNSPDVETATLADVWY 426

  Fly   514 ------IAKDYLIIGLGVLFGVIGIYDSGNALI 540
                  :|.:.:.:..|:|.|:...:.:..|||
 Worm   427 YTPKLLLAFNCISLTFGLLGGLTSAFSAIEALI 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VGATNP_610938.1 SLC5-6-like_sbd 144..533 CDD:382020 77/456 (17%)
Y18D10A.23NP_493251.1 SLC5-6-like_sbd 37..391 CDD:382020 73/405 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG52048
OrthoDB 1 1.010 - - D570025at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100570
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.730

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