DRSC/TRiP Functional Genomics Resources

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Protein Alignment VGAT and slc38a11

DIOPT Version :9

Sequence 1:NP_610938.1 Gene:VGAT / 36574 FlyBaseID:FBgn0033911 Length:549 Species:Drosophila melanogaster
Sequence 2:XP_017952819.1 Gene:slc38a11 / 100487061 XenbaseID:XB-GENE-6045807 Length:391 Species:Xenopus tropicalis


Alignment Length:384 Identity:88/384 - (22%)
Similarity:155/384 - (40%) Gaps:73/384 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   174 IVAMVGIAHICCYTGKVLVQCLYEPDPATGQMVRVRDSYVAIAKVCFG-PKLGARAVSIAQLIEL 237
            ::.::|:|::..|:..:|::         |..:...::|.::....|| |  |...:|:.|.:..
 Frog    10 LLLLIGVAYVTDYSMILLIK---------GGSMSGTNTYQSLVSKTFGFP--GYFLLSVLQFLYP 63

  Fly   238 LMTCILYVVVCGDLL---AGTYPQGSFDSRSW--------MLFVGIFLLPMGF---LKSLKMVST 288
            ....|.|.:|.||:|   ....|..|.|  ||        :|...:..||:..   ::.|..||.
 Frog    64 FAAMISYNIVTGDILPKIIQRIPGVSHD--SWYVDRHVVIVLSTAVITLPIALYRNMEKLGKVSL 126

  Fly   289 LSFWCTMSHIVINAVILGYCLLQIGDWGWSKVRFSIDMENFPIS-----LGVIVFSYTSQIFLPT 348
            ||...|.:.:||  :|:....|.      |::..:.|..:|..|     :||:.|.:........
 Frog   127 LSLLLTFTVLVI--IIVRATSLT------SEIPHTEDAWDFARSNAMQAVGVMSFVFMCHHACFL 183

  Fly   349 LEGNMIDRSKFNWMLDWSHIA------AAVFKAGFGYICFLTF-QNDTQQVITNNLHSQGFKGMV 406
            :.|::...:..||. ..:|::      .::..:.|||:.|..| |.|   :..|.........:.
 Frog   184 IYGSLEKATVGNWS-RITHVSMLLSLFISLQYSVFGYVSFTGFTQGD---LFENYCREDNLATIG 244

  Fly   407 NFFLVIKALLSYPLPYYAACELLERNFFRGPPKTKFPTIWNLDGELKVWGLGFRVGVIVSTILMA 471
            .|...|..:|:||:..:.|.|::...||.|          ||...|.   |...|.::..|..::
 Frog   245 RFCYAITIILTYPMECFVAREVISNVFFGG----------NLPYPLH---LAVTVAIVSLTTAVS 296

  Fly   472 IFIPHFSILMGFIGSFTGTMLSFIWP--CYFHIKIKG--HLLDQKEIAKDYLIIGLGVL 526
            :......:.:...|..:.|.|.||.|  ||.....|.  ||    :.|...||:.|||:
 Frog   297 LVYDCLGMFLELNGVLSATPLVFIIPPACYLKQSEKPWYHL----DNAMPLLILLLGVV 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VGATNP_610938.1 SLC5-6-like_sbd 144..533 CDD:382020 88/384 (23%)
slc38a11XP_017952819.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X361
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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