DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment VGAT and slc38a8a

DIOPT Version :9

Sequence 1:NP_610938.1 Gene:VGAT / 36574 FlyBaseID:FBgn0033911 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_001138287.1 Gene:slc38a8a / 100004247 ZFINID:ZDB-GENE-121005-5 Length:441 Species:Danio rerio


Alignment Length:435 Identity:80/435 - (18%)
Similarity:155/435 - (35%) Gaps:122/435 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 GMFIVSLPFAVLHGGYWAI-VAMVGIAHICCYTGKVLVQCLYEPDPATGQMVRVRDSYVAIAKVC 219
            |:.|....||...|.::|: |.|:.:..:  .:|.|::        .....|..|::|..:....
Zfish    41 GLLIFPWAFAKAGGIHFAVTVEMISLVFL--ISGLVIL--------GYSSSVSGRNTYQGVVTDI 95

  Fly   220 FGPKLGARAVSIAQLIELLMTCILYVVVCGD-----------LLAG----TYPQGSFDSRSWMLF 269
            .||.:| :...|..:..|....:.::|:..|           |:.|    ..|...:..:.:.||
Zfish    96 CGPAIG-KLCEICYVFNLFFISVAFLVIVADQLHKLCLSMYELITGLPESEMPYHWYTDQRFALF 159

  Fly   270 V--GIFLLPMGFLKSLKMVSTLSFWCTMSHIVIN-AVILGYCLLQI-----------GDWGWSKV 320
            :  .:|:.|:...|.:.:....|...|.:...:. |:::.|.:..|           |...|..|
Zfish   160 LLCLLFIFPLSVPKEISIQKYTSVLGTFAAAYLTVAIVVKYHMRPIHEINLSPLYSSGISSWDSV 224

  Fly   321 RFSIDMENFPISLGVIVFSYTSQIFLPTLEGNMIDRSKFNW-------MLDWSHIAAAVFK--AG 376
             ||:        :..|.|.:........:..:|.:|...:|       ||    |...::.  ..
Zfish   225 -FSV--------IPTICFGFQCHEACVAVYSSMENRRLSHWVFISVLSML----ICLLIYSLTGV 276

  Fly   377 FGYICFLTF-QNDTQQVITNNLHSQGFKGMV--NFFLVIKALLSYPLPYYAACELLERNFFRGP- 437
            |||   ||| :|....::.:  :|.|...|:  .....|..:..||:     ..||.|:..:.| 
Zfish   277 FGY---LTFGKNVAPDILMS--YSGGDVTMIVARLLFGISIITIYPI-----IVLLGRSVIQDPL 331

  Fly   438 -----------------PKTKFPTIWNLDGELKVWGLGFRVGVIVSTILMAIFIPHFSILMGFIG 485
                             .:....|.|                 :..|:|:|:|||..|.::..:|
Zfish   332 LRRRLKHTAVTESYESRTRVALTTAW-----------------VTVTLLIAVFIPDISKVISVVG 379

  Fly   486 SFTGTMLSFIWP--CYFHIKIKGHLLDQKEIAKD--YLIIGLGVL 526
            ..:...: ||:|  |...:      :..:.::..  ||::..|::
Zfish   380 GVSAFFI-FIFPGLCLIFV------VQSESVSPTMRYLLVTWGMI 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VGATNP_610938.1 SLC5-6-like_sbd 144..533 CDD:382020 80/435 (18%)
slc38a8aNP_001138287.1 SdaC 17..435 CDD:223884 80/435 (18%)
SLC5-6-like_sbd 29..435 CDD:294310 80/435 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170594483
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.830

Return to query results.
Submit another query.