DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdb and WSC2

DIOPT Version :10

Sequence 1:NP_610937.4 Gene:Sdb / 36573 FlyBaseID:FBgn0050069 Length:4012 Species:Drosophila melanogaster
Sequence 2:NP_014116.1 Gene:WSC2 / 855438 SGDID:S000005227 Length:503 Species:Saccharomyces cerevisiae


Alignment Length:258 Identity:71/258 - (27%)
Similarity:120/258 - (46%) Gaps:42/258 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   169 GGSVSKMFTSSSMSSSQ--------QQQQASSSSS---YFEATTSSSRSANETLIASERADTATG 222
            ||||:::.:.:.:.||:        ..|....||:   |.....|::.|.:.|  |:..:.|::.
Yeast    77 GGSVAQLQSLTQVDSSKCDVSCAGWPYQNCGGSSAMNVYINNAASTADSTSST--ATSTSTTSSS 139

  Fly   223 MTSSGPRKQVGFDTDTKTVTNATTSNSNSSSSSTSTNININTSGSRSSNLSESQSVPKLPMSGTA 287
            .||...:.....||.|.|.::||.|:|:||::||:|:.:..|:.|.||:.|.|.|.     :.|.
Yeast   140 STSVSSKTSTKLDTKTSTSSSATHSSSSSSTTSTTTSSSETTTSSSSSSSSSSTST-----TSTT 199

  Fly   288 DAPASVTSQGYPEPVAASSGATTTKATSSTRRNDKLEVASAKTAVDRATSSSSMVDQRSTKEVSE 352
            ...:|.||       .:||.:||:.:||::        :|::|:..:||||       ||...|.
Yeast   200 STTSSTTS-------TSSSPSTTSSSTSAS--------SSSETSSTQATSS-------STTSTSS 242

  Fly   353 SSVLKSSTSSKQSKSSSKKEVYDVKTKTWTEYSDGSSHGPS--KTRPTFERYVSKESDGTSKV 413
            |:...:.||:..|.|......|..:..|.:..|..:....:  .||.:....||..|..||.:
Yeast   243 STSTATVTSTPSSTSIGTSTHYTTRVVTQSVVSQANQQASTIFTTRTSVYATVSSTSSSTSSL 305

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SdbNP_610937.4 PTZ00449 <747..1157 CDD:185628
PspC_subgroup_2 <1008..1337 CDD:468202
PspC_subgroup_2 <1240..1576 CDD:468202
PspC_subgroup_2 <1414..1750 CDD:468202
PspC_subgroup_2 <1646..1982 CDD:468202
PspC_subgroup_2 <1900..2149 CDD:468202
PTZ00121 <2267..2975 CDD:173412
PspC_subgroup_2 <2690..3026 CDD:468202
auto_AIDA-I 3622..>3968 CDD:380183
WSC2NP_014116.1 WSC 25..118 CDD:214616 10/40 (25%)
Blue background indicates that the domain is not in the aligned region.

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