DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdb and Saxo1

DIOPT Version :10

Sequence 1:NP_610937.4 Gene:Sdb / 36573 FlyBaseID:FBgn0050069 Length:4012 Species:Drosophila melanogaster
Sequence 2:NP_001074565.1 Gene:Saxo1 / 75811 MGIID:1923061 Length:476 Species:Mus musculus


Alignment Length:584 Identity:117/584 - (20%)
Similarity:179/584 - (30%) Gaps:244/584 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   615 CICEICTCGRHHCSSSTTK---STENTVIQTEDNVDEAYTRIRTNTWSKEDNGNIPKQNEDILVD 676
            |||.:|:||||.|....||   .||.|.:.:|      ||                 :|..|...
Mouse     6 CICNLCSCGRHRCPHLPTKIYDKTEKTRLLSE------YT-----------------ENYPIYQS 47

  Fly   677 YIVIKKPEDNLRPEGDFIVPPKEPYKPGE-----KREKIVH------------------TDNLRT 718
            |:    |.::.:||..:    ::|..|.|     :|:..:|                  |.:|.|
Mouse    48 YL----PRNSFKPEWCY----RKPSAPMEGLTTCRRDFGLHKMLPVTFHQPDTYVPSQETMDLLT 104

  Fly   719 EGEMTFVEKEEYQYTVRPGYVKPTDNLKPEGE---FYSPE-KPKYQPGDRP-------------- 765
                |:.....|..|...|.:||.|:..|.|:   .|.|. |..|.|.::|              
Mouse   105 ----TYKHDFNYLPTCPVGLIKPRDSKFPNGDKIMQYLPTYKVDYLPWNQPRRELLRPPHKYRPE 165

  Fly   766 -----SQVRHQDNLKPEG--------------------EFYTPEKPGYAPADRPTQKRPVDNLKP 805
                 ::..|||:...:|                    |..|..|..|.|  .|.:||       
Mouse   166 SSKFENRTTHQDDYTMKGLVTTVSCKPPSKSKIYNIPLEDLTNYKMSYVP--HPVEKR------- 221

  Fly   806 EGEFVSPEKPKYTPAERPEKIIRSDNLRTEGEMTFVEKEEYQYV-------TRPG---------- 853
               ||. |..||.|.:.|     .:||.|       .||.|:.:       |:|.          
Mouse   222 ---FVK-EAEKYIPCDIP-----FENLTT-------HKESYRGLLGEPAKSTKPPAKFPVHDAPF 270

  Fly   854 ----------QVKPTDNLRPEGS--FYSPEKA-----------KYRPGERPSQVRPVDNLKPEGD 895
                      |..||..:.|:..  :..||:.           ||..|......|||.::|    
Mouse   271 TNTTEVQEKFQAWPTPQMVPKAPVVYVPPEEKMDLLTTVQTHYKYLKGSPAITCRPVPSIK---- 331

  Fly   896 FYTPERPGFESA---ERPVQKKPEDNLKPDGEFVRPEKQVYKPADKTERIIRKDNLRTEGEMTFV 957
                :...|||:   :...::....|.||    :||...:..||:                    
Mouse   332 ----KSKCFESSTTTKDDFKQWAAVNTKP----IRPTLHLSLPAE-------------------- 368

  Fly   958 EREEYHYVVRPDQVKPLDNLKPEGEFYSPEKPKYKPGERPSQVRPEDNLRPEGEF-----YTPEK 1017
                           |||........:....|......:|..|....|:..||:.     :||:.
Mouse   369 ---------------PLDCQTTTKTCFVAHPPIITENYKPPWVGLRRNIPVEGQTTYSINFTPKD 418

  Fly  1018 PGFRPAERPVQKKPQDNLKPEGEFVKPEKQVYRPAD----KTERIIRKDNLRTEGEMTFVEREE 1077
            .|..||                .:::|...::...|    |..|.|.:...|....::..:.|:
Mouse   419 LGKCPA----------------SYMEPPGYIFEEVDSMGHKIYRSISQTGSRQNSSISICDTEK 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SdbNP_610937.4 PTZ00449 <747..1157 CDD:185628 79/426 (19%)
PspC_subgroup_2 <1008..1337 CDD:468202 14/79 (18%)
PspC_subgroup_2 <1240..1576 CDD:468202
PspC_subgroup_2 <1414..1750 CDD:468202
PspC_subgroup_2 <1646..1982 CDD:468202
PspC_subgroup_2 <1900..2149 CDD:468202
PTZ00121 <2267..2975 CDD:173412
PspC_subgroup_2 <2690..3026 CDD:468202
auto_AIDA-I 3622..>3968 CDD:380183
Saxo1NP_001074565.1 None
Blue background indicates that the domain is not in the aligned region.

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