DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sdb and Sdb

DIOPT Version :10

Sequence 1:NP_610937.4 Gene:Sdb / 36573 FlyBaseID:FBgn0050069 Length:4012 Species:Drosophila melanogaster
Sequence 2:XP_061510125.1 Gene:Sdb / 1279014 VectorBaseID:AGAMI1_003443 Length:4272 Species:Anopheles gambiae


Alignment Length:524 Identity:103/524 - (19%)
Similarity:170/524 - (32%) Gaps:118/524 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   226 ISGLTSQESVES-DDK---PEHNPMADAGSAKQSTSVPPSEEQETPTTKDSE-FSQEVAPTNDSQ 285
            ::|....|..|: :||   |:..|..:..:...|..|.........|.|.|: ..::.|..|.:.
Mosquito  1204 LNGRAGYEFTETIEDKMVVPDIFPRPNLKNRGSSWGVNRESSLSLATEKSSQIMKRQSAAMNRNN 1268

  Fly   286 LSQVSSNSQL----LTATAASSSEEAQPPEENERLDITEEAQMPTLFSSSTDKLSSSNESEQEGK 346
            ...:..|..|    .|:...|:.|..:..||:....:.:.|   :|..|.|.....|..|:..|.
Mosquito  1269 QDVIYYNQPLNSGGFTSRGTSNREMPKLYEEDRESLLNQSA---SLLGSRTSGRKKSTASKYNGF 1330

  Fly   347 EAGKKITFDFKKDEYDFVGTERPS-AMTLGEESNAEGNRE---PDPEE------------DSSTP 395
            .|.:..:.....     ..:.||| ..|...::.|...|.   ||.|:            ::|.|
Mosquito  1331 SASRMFSSTISN-----ASSSRPSRPSTFDHDTLALRKRSTSLPDGEKLNLEFIETTNLANNSVP 1390

  Fly   396 TATPTETPTETPTKPKDSEEPNLTLQDEETSQSEHSLKICEDSFSDDNTKDSQSKDAPASVQDSP 460
             |.|....:..|...|.|.....:.|.|..|||::      .|:.|..|...|.|...|:|  .|
Mosquito  1391 -AIPNNISSLEPVFRKASIIDGYSSQSESPSQSQY------PSYRDLTTGPHQRKRGIATV--FP 1446

  Fly   461 SKMKGLTDASSCSVKSDDGGKNVPATPADDKKDEQVPPEPEPEAANDEQKPEEKEMEETKEEKVQ 525
            .:.:.|:...:..:|.::.|.:...|.|...:......:|..:.|.....|:|...:|       
Mosquito  1447 VRKRSLSCGDAVPLKINENGASGSITTAVSPRSSCRALDPTMKLAARASSPDEIIFQE------- 1504

  Fly   526 EDTERKDKSPKSDKDDDDHYQEHRKHEPNRRSSDRDS---EDGNDKHDSGGSTAPSANGTGE--- 584
                          ||:|            ...|.||   .:||.|.:....|.|......:   
Mosquito  1505 --------------DDED------------ALIDNDSLLTSNGNSKSEDVLRTCPQPRRKNKHSF 1543

  Fly   585 --KPNPSAQESSEKAPEKEKSP----------AKEPTDGIDPLMLS---------KERDRLCGSV 628
              .|:|.|:...:.:|..:|.|          ...|.|.|..|...         .:.:..|...
Mosquito  1544 LRDPSPLAKRFRDASPFGKKKPFWNSNKSNEHTSSPADSISRLFRRFRGGSVNEYADLNHYCDDE 1608

  Fly   629 TPTGEGAPMDSSSSGIQSGDDSEK------------SPE---TLKSYSKPESIVLPVQPVVIDQM 678
            ..:|.....:....|..:|...|:            ||:   ||...|.|. :.:|...:.....
Mosquito  1609 DESGRANGYEMQEMGKMTGRQREQRNGSRTNRSVSCSPDECGTLTDSSDPH-LTIPSSSIGDSSA 1672

  Fly   679 LTSM 682
            .||:
Mosquito  1673 STSL 1676

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SdbNP_610937.4 PTZ00449 <747..1157 CDD:185628
PspC_subgroup_2 <1008..1337 CDD:468202
PspC_subgroup_2 <1240..1576 CDD:468202
PspC_subgroup_2 <1414..1750 CDD:468202
PspC_subgroup_2 <1646..1982 CDD:468202
PspC_subgroup_2 <1900..2149 CDD:468202
PTZ00121 <2267..2975 CDD:173412
PspC_subgroup_2 <2690..3026 CDD:468202
auto_AIDA-I 3622..>3968 CDD:380183
SdbXP_061510125.1 None
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.