DRSC/TRiP Functional Genomics Resources

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Protein Alignment cg and WIP3

DIOPT Version :9

Sequence 1:NP_001097306.2 Gene:cg / 36571 FlyBaseID:FBgn0000289 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_172306.1 Gene:WIP3 / 837349 AraportID:AT1G08290 Length:337 Species:Arabidopsis thaliana


Alignment Length:309 Identity:75/309 - (24%)
Similarity:109/309 - (35%) Gaps:113/309 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   235 SVQVQKVIQGLEDNEDSQGEAPNLKLEPG----TLELS-PK-----TELQESMHFSETDATIKKE 289
            |:|...::..|.:|   ..:|.::|.|..    ||::. ||     :|....:.|......||:|
plant    71 SIQCLPLLNKLMEN---NSQASDIKEENKDDVVTLQIGFPKYHRGSSEDGSDITFDHQKKPIKRE 132

  Fly   290 ------------RPYSCDE---------CGKSFLLKHHLTTHARVHTGERPHICTHCGKSFAHKH 333
                        |....||         |||.|    .:.:.|::|.|.....|:.|.|:|...:
plant   133 IIEDGVVMMKKRRKMKFDEEIIDSDVEVCGKRF----WIPSPAQIHVGPMQFACSICSKTFNRYN 193

  Fly   334 CLNTHLLLHSTE------------RP--------YQCQE-CKKSFTLKHHLLTHSRVHSRERPFV 377
            .:..|:..|.:|            :|        |.|.| ||.:..           |.|.:   
plant   194 NMQMHMWGHGSEFRKGADSLKGTIQPAAILRLPCYCCAEGCKNNIN-----------HPRSK--- 244

  Fly   378 CQECGRAFPLK--RHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHGSLNPFVCAECGAS 440
                    |||  |.|.||.|                           |.||| .||.|.:||.:
plant   245 --------PLKDFRTLQTHYK---------------------------RKHGS-KPFSCGKCGKA 273

  Fly   441 FPRKFQLVNHGRIHGKIPHSCTVCGKEFLQKRTLVSHMRRVHTGEQAHP 489
            ...|.....|.:..||:.: || ||.:|..||:|..|:|...:|...||
plant   274 LAVKGDWRTHEKNCGKLWY-CT-CGSDFKHKRSLKDHIRSFGSGHSPHP 320

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cgNP_001097306.2 COG5048 287..>371 CDD:227381 25/125 (20%)
C2H2 Zn finger 294..314 CDD:275368 7/28 (25%)
zf-H2C2_2 306..331 CDD:290200 7/24 (29%)
C2H2 Zn finger 322..342 CDD:275368 5/19 (26%)
C2H2 Zn finger 350..370 CDD:275368 4/20 (20%)
zf-H2C2_2 362..385 CDD:290200 2/22 (9%)
C2H2 Zn finger 378..398 CDD:275368 8/21 (38%)
zf-H2C2_2 390..415 CDD:290200 4/24 (17%)
C2H2 Zn finger 406..426 CDD:275368 1/19 (5%)
SIR2 <425..>465 CDD:294129 14/39 (36%)
C2H2 Zn finger 434..454 CDD:275368 5/19 (26%)
C2H2 Zn finger 461..482 CDD:275368 10/20 (50%)
C2H2 Zn finger 490..509 CDD:275368 75/309 (24%)
lambda-1 491..>603 CDD:212564
C2H2 Zn finger 575..595 CDD:275368
C2H2 Zn finger 720..740 CDD:275368
C2H2 Zn finger 752..771 CDD:275368
WIP3NP_172306.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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