DRSC/TRiP Functional Genomics Resources

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Protein Alignment cg and gfi1ab

DIOPT Version :9

Sequence 1:NP_001097306.2 Gene:cg / 36571 FlyBaseID:FBgn0000289 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_958495.1 Gene:gfi1ab / 798697 ZFINID:ZDB-GENE-040116-8 Length:396 Species:Danio rerio


Alignment Length:419 Identity:109/419 - (26%)
Similarity:157/419 - (37%) Gaps:97/419 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 KKQDNNQQVLSLDKNYLLVDPATAAAAAAAAGGDSGLAHHHTLTNGSIVDAKTGQTVLTAGSAAA 164
            ||..:..|..||:.::..:|...|...|.:...|.         :....||.||.   |.|:.:.
Zfish    10 KKAHSYHQPRSLEDDFNRLDNILAHICAESKTSDE---------SECCADALTGD---TTGAGSP 62

  Fly   165 KSH------FSSIGALHLTQEECN----------------------------------------- 182
            .||      .||...|...:..|:                                         
Zfish    63 DSHLLDQADLSSKSPLSCEESVCDRSSDYEDFWRPPSPSASPESEKSFSPSVEETQPFAVPFRPY 127

  Fly   183 --------EI--LIKRAIAAGHHQTHTITAADGSHHHASGGTPS-FCSVGGATTLLGDILPGISV 236
                    ||  |::..:  .||::..:.....::::.....|| |...|....:........|:
Zfish   128 AWSRYSGCEIRQLVQHTL--NHHRSLELERPTPTYYNERVTEPSIFTERGSGARIYNSYGSTASL 190

  Fly   237 QVQKVIQGLEDNEDSQGEAPNLKLEPGTLELSPKTELQESMHFSETDATIKK---ERPYSCDECG 298
            ..:....||.|:....|:...:|                    |.:|....:   ...|.|.:|.
Zfish   191 FERATASGLFDDSSMLGKGTEMK--------------------SSSDVICSRLLLNGAYKCIKCS 235

  Fly   299 KSFLLKHHLTTHA-RVHTGERPHICTHCGKSFAHKHCLNTHLLLHSTERPYQCQECKKSFTLKHH 362
            |.|...|.|..|. |.|:|.||..|..|||:|.|...|..|..:||.||.:.|:.|.|||.....
Zfish   236 KVFSTPHGLEVHVRRSHSGTRPFACDICGKTFGHAVSLEQHRAVHSQERSFDCKICGKSFKRSST 300

  Fly   363 LLTHSRVHSRERPFVCQECGRAFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHG 427
            |.||..:||..||:.||.||:.|..|..:..|:..|.||:|:.|:.||::|:|.::||.|||.|.
Zfish   301 LSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHT 365

  Fly   428 SLNPFVCAECGASFPRKFQLVNHGRI-HG 455
            ...||.|..||..|.||..|..|... ||
Zfish   366 GFKPFGCDLCGKGFQRKVDLRRHKETQHG 394

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cgNP_001097306.2 COG5048 287..>371 CDD:227381 33/87 (38%)
C2H2 Zn finger 294..314 CDD:275368 8/20 (40%)
zf-H2C2_2 306..331 CDD:290200 12/25 (48%)
C2H2 Zn finger 322..342 CDD:275368 8/19 (42%)
C2H2 Zn finger 350..370 CDD:275368 8/19 (42%)
zf-H2C2_2 362..385 CDD:290200 11/22 (50%)
C2H2 Zn finger 378..398 CDD:275368 7/19 (37%)
zf-H2C2_2 390..415 CDD:290200 9/24 (38%)
C2H2 Zn finger 406..426 CDD:275368 10/19 (53%)
SIR2 <425..>465 CDD:294129 13/32 (41%)
C2H2 Zn finger 434..454 CDD:275368 8/20 (40%)
C2H2 Zn finger 461..482 CDD:275368
C2H2 Zn finger 490..509 CDD:275368
lambda-1 491..>603 CDD:212564
C2H2 Zn finger 575..595 CDD:275368
C2H2 Zn finger 720..740 CDD:275368
C2H2 Zn finger 752..771 CDD:275368
gfi1abNP_958495.1 C2H2 Zn finger 231..252 CDD:275368 8/20 (40%)
C2H2 Zn finger 260..280 CDD:275368 8/19 (42%)
zf-H2C2_2 272..297 CDD:290200 11/24 (46%)
C2H2 Zn finger 288..308 CDD:275368 8/19 (42%)
COG5048 296..>365 CDD:227381 28/68 (41%)
C2H2 Zn finger 316..336 CDD:275368 7/19 (37%)
zf-H2C2_2 328..353 CDD:290200 9/24 (38%)
C2H2 Zn finger 344..364 CDD:275368 10/19 (53%)
C2H2 Zn finger 372..391 CDD:275368 8/18 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24388
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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