DRSC/TRiP Functional Genomics Resources

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Protein Alignment cg and jim

DIOPT Version :10

Sequence 1:NP_001097306.2 Gene:cg / 36571 FlyBaseID:FBgn0000289 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_001262221.1 Gene:jim / 43924 FlyBaseID:FBgn0027339 Length:938 Species:Drosophila melanogaster


Alignment Length:58 Identity:18/58 - (31%)
Similarity:24/58 - (41%) Gaps:16/58 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   851 TTIPPTIVQKAVPKDRYQSIQRSGNEG--HTPSTVK---------KFSTLVPKDQYNP 897
            ||:|  :.|:.|   ||.....|||.|  .|.:.||         :..|..|..:|.|
  Fly    57 TTVP--LEQRCV---RYIDNFSSGNRGAASTENFVKAGYAVIFLYRRGTCQPYCRYLP 109

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cgNP_001097306.2 COG5048 287..>371 CDD:227381
C2H2 Zn finger 294..314 CDD:275368
zf-H2C2_2 306..331 CDD:463886
C2H2 Zn finger 322..342 CDD:275368
C2H2 Zn finger 350..370 CDD:275368
C2H2 Zn finger 378..398 CDD:275368
C2H2 Zn finger 406..426 CDD:275368
C2H2 Zn finger 434..454 CDD:275368
C2H2 Zn finger 461..482 CDD:275368
C2H2 Zn finger 490..509 CDD:275368
C2H2 Zn finger 575..595 CDD:275368
C2H2 Zn finger 720..740 CDD:275368
C2H2 Zn finger 752..771 CDD:275368
jimNP_001262221.1 C2H2 Zn finger 331..351 CDD:275368
COG5048 355..666 CDD:227381
C2H2 Zn finger 359..379 CDD:275368
C2H2 Zn finger 387..407 CDD:275368
C2H2 Zn finger 415..435 CDD:275368
C2H2 Zn finger 527..547 CDD:275368
C2H2 Zn finger 555..575 CDD:275368
C2H2 Zn finger 583..603 CDD:275368
C2H2 Zn finger 611..631 CDD:275368
C2H2 Zn finger 639..661 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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