DRSC/TRiP Functional Genomics Resources

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Protein Alignment cg and gl

DIOPT Version :10

Sequence 1:NP_001097306.2 Gene:cg / 36571 FlyBaseID:FBgn0000289 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_001262708.1 Gene:gl / 42210 FlyBaseID:FBgn0004618 Length:679 Species:Drosophila melanogaster


Alignment Length:233 Identity:78/233 - (33%)
Similarity:100/233 - (42%) Gaps:38/233 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   316 GE-RPHICTHCGKSFAHKHCLNTHLLLHSTERPYQCQECKKSFTLKHHLLTHSRVHSRERPFVCQ 379
            || :|::|..|||::|....|.|||..||.||||:|.:|.|||:...:|..|.|.|:.::||.|.
  Fly   432 GEMKPNLCRLCGKTYARPSTLKTHLRTHSGERPYRCPDCNKSFSQAANLTAHVRTHTGQKPFRCP 496

  Fly   380 ECGRAFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHGSLNPFVCAECGASFPRK 444
            .|.|.|.....:.||.:.|:|||||.|..|.:||:..:.|..|.|.|....|:.|..|...|.:.
  Fly   497 ICDRRFSQSSSVTTHMRTHSGERPYRCSSCKKSFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQS 561

  Fly   445 FQLVNHGRIHGKIPHS-----CTVCGKEFLQKRTLVSHMRRVHTGEQAHPCVSCGEGFLT----- 499
            ..|..|.|:||....|     .|..|.|             ..||..    |..|...||     
  Fly   562 GNLNRHMRVHGNNNSSNGSNGATGVGGE-------------SSTGSG----VGGGNSLLTXQKPR 609

  Fly   500 KAELHQHVRTAHNGVNPNTSSATIIANQQLQQAHHHQA 537
            .|...||....|          |...:.|....|||.|
  Fly   610 SAGGFQHYHPPH----------THHMHHQHHAHHHHHA 637

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cgNP_001097306.2 COG5048 287..>371 CDD:227381 26/55 (47%)
C2H2 Zn finger 294..314 CDD:275368
zf-H2C2_2 306..331 CDD:463886 7/15 (47%)
C2H2 Zn finger 322..342 CDD:275368 9/19 (47%)
C2H2 Zn finger 350..370 CDD:275368 8/19 (42%)
C2H2 Zn finger 378..398 CDD:275368 6/19 (32%)
C2H2 Zn finger 406..426 CDD:275368 7/19 (37%)
C2H2 Zn finger 434..454 CDD:275368 6/19 (32%)
C2H2 Zn finger 461..482 CDD:275368 3/20 (15%)
C2H2 Zn finger 490..509 CDD:275368 7/23 (30%)
C2H2 Zn finger 575..595 CDD:275368
C2H2 Zn finger 720..740 CDD:275368
C2H2 Zn finger 752..771 CDD:275368
glNP_001262708.1 COG5048 <426..571 CDD:227381 56/138 (41%)
C2H2 Zn finger 439..459 CDD:275368 9/19 (47%)
C2H2 Zn finger 467..487 CDD:275368 8/19 (42%)
C2H2 Zn finger 495..515 CDD:275368 6/19 (32%)
C2H2 Zn finger 523..543 CDD:275368 7/19 (37%)
C2H2 Zn finger 551..571 CDD:275368 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.

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