DRSC/TRiP Functional Genomics Resources

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Protein Alignment cg and Kah

DIOPT Version :10

Sequence 1:NP_001097306.2 Gene:cg / 36571 FlyBaseID:FBgn0000289 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_612040.1 Gene:Kah / 38072 FlyBaseID:FBgn0035144 Length:442 Species:Drosophila melanogaster


Alignment Length:469 Identity:97/469 - (20%)
Similarity:151/469 - (32%) Gaps:127/469 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 LSLDKNYLLVDPATAAAAAAAAGGDSGLAHHHTLTNGSIVDAKTGQTVLTAGSAAAKSHFSSIGA 173
            ::|....|:.|........|::..||....|.....     .|..:..::..::.|.|..||..:
  Fly    23 VTLSVGPLVTDEVKPLPLYASSDDDSNYYSHKVFDR-----RKLRRCTISDSNSCASSSSSSTSS 82

  Fly   174 LHLTQEECNEILIKRAIAAGHHQTHTITAADGSHHHASGGTPSFCSVGGATTLLGDILPGISVQV 238
            ...:::...        ..||...|        |||.                            
  Fly    83 RQSSEDHLG--------LQGHSSVH--------HHHG---------------------------- 103

  Fly   239 QKVIQGLEDNEDSQGEAPNLKLEPGTLELSPKTELQESMHFSETDATIKKERPYSCDECGKSFLL 303
                        .|||..|            .|.|.|..|.              |.||||.:..
  Fly   104 ------------EQGEILN------------STSLLEDEHI--------------CPECGKKYST 130

  Fly   304 KHHLTTHARVHTG---ERPHICTHCGKSFAHKHCLNTHLLLHSTERPYQCQECKKSFTLKHHLLT 365
            ..:|..|.:.|..   ::...|.:|.|.:......:.|:..|:  :..:||.|.|.|:....|..
  Fly   131 SSNLARHRQTHRSIMDKKARHCPYCEKVYVSMPAYSMHVRTHN--QGCECQFCGKRFSRPWLLQG 193

  Fly   366 HSRVHSRERPFVCQECGRAFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHGSLN 430
            |.|.|:.|:||.|..|.:||..|.:|..|.:.|:..:|:.|..||::||.:::|..|.......|
  Fly   194 HIRTHTGEKPFKCGVCEKAFADKSNLRAHIQTHSNTKPHTCARCGKAFALKSYLYKHEESSCMKN 258

  Fly   431 PFVCAECGA-------SFPRKFQL-VNHGRIHGKIPHS--CTVCGKEFLQKRTLVSHMRRVHTGE 485
            .......||       |.|::.|. |..|.|....|.|  ..||......|.||.:.:  :...:
  Fly   259 RGGVPGSGAASGNRPPSSPKRQQAEVTSGTISALAPGSPAAAVCAASDSAKSTLANKL--LQKEK 321

  Fly   486 QAHPCVSCGEGFLTKAEL--HQHVRTAH---------NGVNPNTSSATIIANQQ--LQQAH---- 533
            .........:||....|:  :.|..:|.         |.:.|......:.:..|  |...|    
  Fly   322 DRRQAAMAFQGFPAGPEVTAYSHATSAQEEYEKFKRINVIQPKVMPHRVPSLYQDLLPNRHVPLA 386

  Fly   534 ------HHQAGQQT 541
                  :|..||.|
  Fly   387 LPLAMPYHFQGQAT 400

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cgNP_001097306.2 COG5048 287..>371 CDD:227381 21/86 (24%)
C2H2 Zn finger 294..314 CDD:275368 7/19 (37%)
zf-H2C2_2 306..331 CDD:463886 6/27 (22%)
C2H2 Zn finger 322..342 CDD:275368 4/19 (21%)
C2H2 Zn finger 350..370 CDD:275368 8/19 (42%)
C2H2 Zn finger 378..398 CDD:275368 7/19 (37%)
C2H2 Zn finger 406..426 CDD:275368 7/19 (37%)
C2H2 Zn finger 434..454 CDD:275368 7/27 (26%)
C2H2 Zn finger 461..482 CDD:275368 5/20 (25%)
C2H2 Zn finger 490..509 CDD:275368 4/20 (20%)
C2H2 Zn finger 575..595 CDD:275368
C2H2 Zn finger 720..740 CDD:275368
C2H2 Zn finger 752..771 CDD:275368
KahNP_612040.1 C2H2 Zn finger 121..141 CDD:275368 7/19 (37%)
zf-C2H2 176..198 CDD:395048 8/21 (38%)
C2H2 Zn finger 178..198 CDD:275368 8/19 (42%)
zf-H2C2_2 191..214 CDD:463886 10/22 (45%)
zf-C2H2 204..226 CDD:395048 8/21 (38%)
C2H2 Zn finger 206..226 CDD:275368 7/19 (37%)
C2H2 Zn finger 234..250 CDD:275368 6/15 (40%)
Blue background indicates that the domain is not in the aligned region.

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