DRSC/TRiP Functional Genomics Resources

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Protein Alignment cg and Cf2

DIOPT Version :9

Sequence 1:NP_001097306.2 Gene:cg / 36571 FlyBaseID:FBgn0000289 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_001350854.1 Gene:Cf2 / 33692 FlyBaseID:FBgn0000286 Length:537 Species:Drosophila melanogaster


Alignment Length:462 Identity:97/462 - (20%)
Similarity:154/462 - (33%) Gaps:148/462 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 PSFPPGTQRVITAGGA------STVVKKQDNNQQV----LSLDKNYLLVDPATAAAAAAAAGGDS 134
            |..||.:....||..|      :||:...|..:..    ||:|.| :.|.|..............
  Fly    24 PPPPPSSATTSTAAPATPTHQVATVIANMDTLKTAFLPNLSMDPN-VHVSPHYCPMCHQQFERPQ 87

  Fly   135 GLAHHHTLTNGSIVDAKTGQTVLTAGSAAAKSH-------------------------------- 167
            .:|.|..|.:|..::|:.....|..|...|:.|                                
  Fly    88 HVADHMQLCHGITLNAQGAIATLDGGHPQAQQHPKLSHPCFNCDEKFGNAVDLDEHHRLAHQTPA 152

  Fly   168 ------FSSIGALH-LTQE-------ECNEILIKRAIAAG------------------------- 193
                  ..||..:| .||:       :|..|.....:|||                         
  Fly   153 FLSRCLMCSIYGIHSATQQPNEYKCTQCGSICTTAMLAAGQQGFMEQQEAAVTPDDQLPAMAPRD 217

  Fly   194 --------HHQTHTITAADGSHHHASGGTPSFCSVGGATTLLGDILPGISVQV-QKVIQGLEDNE 249
                    |||..    ....|||................||......:..|. |:.:...:.::
  Fly   218 MRLTPEEQHHQQQ----LQAEHHHQQQHQQQQQQQQQQQELLEQQQREMQEQAQQQQVHHHQQDQ 278

  Fly   250 DSQGEAPNLKLEPGTLELS-----------PKTEL-QESMHFSETDATIKKERPYS--------- 293
            |..|:...||:.|.|::|:           |:..: :|.:..|::...:.....|:         
  Fly   279 DLAGDQVALKVPPLTVKLNKNANGGAIVSHPQVIIKEEPLSLSDSGDVVNSVPVYAIQANPGVPA 343

  Fly   294 ------------------------CDECGKSFLLKHHLTTHARVHTG-------ERPHICTHCGK 327
                                    |.:|.|:|.....|..|.::|||       |||:.|::|||
  Fly   344 PASSGVLVGTQTVPADLAHKIRHKCPDCPKTFKTPGTLAMHRKIHTGEADATPKERPYTCSYCGK 408

  Fly   328 SFAHKHCLNTHLLLHSTERPYQCQECKKSFTLKHHLLTHSRVHSRERPFVCQECGRAFPLKRHLV 392
            ||...:.|..|..:|:.|:|:.|..|:|||::|.:|..|.|.|:.|:|:.|..|.:.|..:..|.
  Fly   409 SFTQSNTLKQHTRIHTGEKPFHCGYCEKSFSVKDYLTKHIRTHTGEKPYTCPYCDKRFTQRSALT 473

  Fly   393 TH-SKFH 398
            .| :|.|
  Fly   474 VHTTKLH 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cgNP_001097306.2 COG5048 287..>371 CDD:227381 33/123 (27%)
C2H2 Zn finger 294..314 CDD:275368 6/19 (32%)
zf-H2C2_2 306..331 CDD:290200 14/31 (45%)
C2H2 Zn finger 322..342 CDD:275368 8/19 (42%)
C2H2 Zn finger 350..370 CDD:275368 9/19 (47%)
zf-H2C2_2 362..385 CDD:290200 8/22 (36%)
C2H2 Zn finger 378..398 CDD:275368 6/20 (30%)
zf-H2C2_2 390..415 CDD:290200 4/10 (40%)
C2H2 Zn finger 406..426 CDD:275368
SIR2 <425..>465 CDD:294129
C2H2 Zn finger 434..454 CDD:275368
C2H2 Zn finger 461..482 CDD:275368
C2H2 Zn finger 490..509 CDD:275368
lambda-1 491..>603 CDD:212564
C2H2 Zn finger 575..595 CDD:275368
C2H2 Zn finger 720..740 CDD:275368
C2H2 Zn finger 752..771 CDD:275368
Cf2NP_001350854.1 COG5048 <366..>473 CDD:227381 38/106 (36%)
C2H2 Zn finger 368..388 CDD:275368 6/19 (32%)
C2H2 Zn finger 403..423 CDD:275368 8/19 (42%)
C2H2 Zn finger 431..451 CDD:275368 9/19 (47%)
zf-H2C2_2 443..468 CDD:316026 9/24 (38%)
C2H2 Zn finger 459..480 CDD:275368 6/20 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24388
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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