DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cg and CG10959

DIOPT Version :9

Sequence 1:NP_001097306.2 Gene:cg / 36571 FlyBaseID:FBgn0000289 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_572451.1 Gene:CG10959 / 31743 FlyBaseID:FBgn0030010 Length:443 Species:Drosophila melanogaster


Alignment Length:364 Identity:92/364 - (25%)
Similarity:142/364 - (39%) Gaps:95/364 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   174 LHLTQEECNEILIKRAIAAGHHQT---HTI-TAADGSHHHASGGTPSFCSVGGATTLLGDILPGI 234
            |.|.|:|.|.:   |.:..|..|:   .|| |.....|..:|......|::              
  Fly   120 LGLEQDEGNPL---RIMVLGGKQSVDEETIDTMWQPDHDSSSASVNEGCAL-------------- 167

  Fly   235 SVQVQKVIQGLEDNEDSQGEAPNLKLEPGTLELSPKTELQESMHFSETDATIKKER---PYSCDE 296
                 :.:.|:|:.:|.|.:      |.|                .|..:..||:|   .|:|..
  Fly   168 -----EALLGVENPQDYQPD------EDG----------------EEHQSVFKKQRQPKDYNCPH 205

  Fly   297 CGKSFLLKHHLTTHARV------------------------------HTGERPHICTHCGKSFAH 331
            |.:.:..:.:|.||.::                              ||   ...|..|.|.|..
  Fly   206 CDRRYTTQKYLNTHLKMSHPFPQAFKCVDCKATFDVDRALAQHRRKEHT---EFACQLCDKVFKS 267

  Fly   332 KHCLNTHLLLHSTERPYQC--QECKKSFTLKHHLLTHSRVHSRERPFVCQECGRAFPLKRHLVTH 394
            ...|..|:..||..|.::|  :.|.|||..:|:|.:|.||||.||.:||:.||.....:..|:.|
  Fly   268 SRSLLRHVQGHSGARTFKCEHENCGKSFVNQHNLTSHRRVHSEERNYVCELCGYRSRYREALIVH 332

  Fly   395 SKFHAGERPYVCEECGESFAQENHLIMHSRFHGSLNPFVCAECGASFPRKFQLVNHGRIH-GKIP 458
            .:.|.||:|:.|:.|...||.::.|..|...|.:..|:.|.:|.::|.|...|.:|..:| |...
  Fly   333 RRTHTGEKPFQCQTCARRFASKSLLNEHQAMHSTEKPYKCDKCDSAFSRPKALYHHKHLHLGIKK 397

  Fly   459 HSCTVCGKEFLQKRTLVSHMR--------RVHTGEQAHP 489
            ..|.:||..:.|...|.:|||        ....|.:|.|
  Fly   398 FKCKICGNAYAQAAGLSAHMRAHKLQASVNATEGAEAEP 436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cgNP_001097306.2 COG5048 287..>371 CDD:227381 30/118 (25%)
C2H2 Zn finger 294..314 CDD:275368 5/49 (10%)
zf-H2C2_2 306..331 CDD:290200 9/54 (17%)
C2H2 Zn finger 322..342 CDD:275368 6/19 (32%)
C2H2 Zn finger 350..370 CDD:275368 9/21 (43%)
zf-H2C2_2 362..385 CDD:290200 12/22 (55%)
C2H2 Zn finger 378..398 CDD:275368 5/19 (26%)
zf-H2C2_2 390..415 CDD:290200 9/24 (38%)
C2H2 Zn finger 406..426 CDD:275368 6/19 (32%)
SIR2 <425..>465 CDD:294129 11/40 (28%)
C2H2 Zn finger 434..454 CDD:275368 6/19 (32%)
C2H2 Zn finger 461..482 CDD:275368 8/28 (29%)
C2H2 Zn finger 490..509 CDD:275368 92/364 (25%)
lambda-1 491..>603 CDD:212564
C2H2 Zn finger 575..595 CDD:275368
C2H2 Zn finger 720..740 CDD:275368
C2H2 Zn finger 752..771 CDD:275368
CG10959NP_572451.1 C2H2 Zn finger 232..253 CDD:275368 0/20 (0%)
COG5048 <258..416 CDD:227381 54/157 (34%)
C2H2 Zn finger 258..278 CDD:275368 6/19 (32%)
C2H2 Zn finger 289..308 CDD:275368 8/18 (44%)
C2H2 Zn finger 316..336 CDD:275368 5/19 (26%)
zf-H2C2_2 328..353 CDD:290200 9/24 (38%)
C2H2 Zn finger 344..364 CDD:275368 6/19 (32%)
zf-H2C2_2 357..381 CDD:290200 7/23 (30%)
C2H2 Zn finger 372..392 CDD:275368 6/19 (32%)
C2H2 Zn finger 400..420 CDD:275368 8/19 (42%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24388
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.