DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ReepB and reep3b

DIOPT Version :9

Sequence 1:NP_001188928.1 Gene:ReepB / 36569 FlyBaseID:FBgn0033906 Length:178 Species:Drosophila melanogaster
Sequence 2:NP_956455.1 Gene:reep3b / 393130 ZFINID:ZDB-GENE-040426-730 Length:256 Species:Danio rerio


Alignment Length:103 Identity:36/103 - (34%)
Similarity:62/103 - (60%) Gaps:5/103 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 IIGVLYPAYISIHAIESSTKQDDTKWLIYWVTFGIFTVIEFFSSLLTSVIPFYWLLKCAFLIWCM 133
            :.|.|||||.|..|:::...::..:|::||:.|.:|||:|..:.|..:..|.|:.:|.||:||.:
Zfish    13 VFGNLYPAYYSYKAVKTKNVKEYVRWMMYWIVFALFTVVETVADLTIAWFPLYYEIKIAFVIWLL 77

  Fly   134 LPTEQNGSTIIYNKLVRPYFLKHHESVDRIIDDGMKKA 171
            .|..: |:::||.|.:.|..    .|.:|.|||.:.:|
Zfish    78 SPYTR-GASVIYRKALHPLL----SSKEREIDDYIVQA 110

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ReepBNP_001188928.1 TB2_DP1_HVA22 63..151 CDD:281172 29/81 (36%)
reep3bNP_956455.1 TB2_DP1_HVA22 7..94 CDD:281172 29/81 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 177..256
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1473891at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

Return to query results.
Submit another query.