DRSC/TRiP Functional Genomics Resources

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Protein Alignment ReepB and Reep1

DIOPT Version :9

Sequence 1:NP_001188928.1 Gene:ReepB / 36569 FlyBaseID:FBgn0033906 Length:178 Species:Drosophila melanogaster
Sequence 2:XP_038963735.1 Gene:Reep1 / 362384 RGDID:1305230 Length:310 Species:Rattus norvegicus


Alignment Length:109 Identity:37/109 - (33%)
Similarity:59/109 - (54%) Gaps:1/109 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 IIGVLYPAYISIHAIESSTKQDDTKWLIYWVTFGIFTVIEFFSSLLTSVIPFYWLLKCAFLIWCM 133
            |.|.|||||.|..|::|...::..||::||:.|.:||..|.|:.:.....|||:.||.||:.|.:
  Rat    22 IFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLCWFPFYYELKIAFVAWLL 86

  Fly   134 LPTEQNGSTIIYNKLVRPYFLKHHESVDRIIDDGMKKAAGVLKH 177
            .|..: ||:::|.|.|.|......:.:|..:.....::...|.|
  Rat    87 SPYTK-GSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVH 129

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ReepBNP_001188928.1 TB2_DP1_HVA22 63..151 CDD:281172 33/81 (41%)
Reep1XP_038963735.1 TB2_DP1_HVA22 28..103 CDD:397309 29/75 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1473891at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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