DRSC/TRiP Functional Genomics Resources

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Protein Alignment eIF3m and eif3m

DIOPT Version :10

Sequence 1:NP_610932.1 Gene:eIF3m / 36565 FlyBaseID:FBgn0033902 Length:387 Species:Drosophila melanogaster
Sequence 2:NP_001004794.1 Gene:eif3m / 448014 XenbaseID:XB-GENE-968605 Length:374 Species:Xenopus tropicalis


Alignment Length:374 Identity:175/374 - (46%)
Similarity:257/374 - (68%) Gaps:2/374 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SHPVFIDLSLDEQVQELRKYFKKLGAEISSEKSNKGVEDDLHKIIGVCDVCFKDGEPSQIDGILN 67
            |.|.|||::.::|..|||.|.|..|||||.|.|..|:..||.:||..||||.|| :...::..:|
 Frog     2 SVPAFIDVTEEDQAAELRAYLKSKGAEISEENSEGGLHIDLAQIIEACDVCLKD-DDKDVESSMN 65

  Fly    68 SIVSIMITIPLDRGENIVLAYCEKMTKAPNLPLGKVCLQSLWRLFNNLDTASPLRYHVYYHLVQV 132
            |:||:::.:..|:.|.::.:.|||:.|........:.||.|..||:.:|.:.|.||.||..|::|
 Frog    66 SVVSLVLILETDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKSIPARYTVYCGLIKV 130

  Fly   133 AKQCEQVLEVFSGVDQLKSQFANCPPSSEQMQKLYRLLHDVTKD-TNLELSSKVMIELLGTYTAD 196
            |..|..::.:.:.:||::...::...|:|:...:.|||::...| ...:.::|||:||||:||.|
 Frog   131 AATCGAIIYIPTDLDQVRKWISDWNLSTEKKHIVLRLLYEALVDCKKSDEAAKVMVELLGSYTDD 195

  Fly   197 NACVAREDAMKCIVTALADPNTFLLDPLLSLKPVRFLEGDLIHDLLSIFVSEKLPAYVQFYEDHR 261
            ||..||.||.||||.||.||..||||.||:||||:||||:||||||:||||.||.:||:||::::
 Frog   196 NASQARLDAHKCIVRALKDPKAFLLDHLLALKPVKFLEGELIHDLLTIFVSAKLSSYVKFYQNNK 260

  Fly   262 EFVNSQGLNHEQNMKKMRLLTFMQLAESSPEMTFETLTKELQINEDEVEPFVIEVLKTKLVRARL 326
            :|::|.||:|||||:||||||||.:|..:.|::|:|:.:||||..||||.|:|:.:|||:|..::
 Frog   261 DFIDSLGLSHEQNMEKMRLLTFMGMAVDNKEISFDTIQQELQIGADEVEAFIIDAVKTKMVYCKI 325

  Fly   327 DQANQKVHISSTMHRTFGAPQWEQLRDLLQAWKENLSTVREGLTSVSSA 375
            ||..::|.:|.:.|||||..||:||.|.|..||:||:.|:..|.|:|.|
 Frog   326 DQTQKRVVVSHSTHRTFGKQQWQQLYDTLNTWKQNLNKVKNSLYSISDA 374

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eIF3mNP_610932.1 PCI 236..336 CDD:460195 54/99 (55%)
eIF3m_C_helix 341..369 CDD:465614 15/27 (56%)
eif3mNP_001004794.1 PINT 271..357 CDD:214509 45/85 (53%)

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