DRSC/TRiP Functional Genomics Resources

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Protein Alignment pea and AT1G27900

DIOPT Version :9

Sequence 1:NP_610928.1 Gene:pea / 36561 FlyBaseID:FBgn0086895 Length:1242 Species:Drosophila melanogaster
Sequence 2:NP_564296.1 Gene:AT1G27900 / 839683 AraportID:AT1G27900 Length:700 Species:Arabidopsis thaliana


Alignment Length:699 Identity:305/699 - (43%)
Similarity:438/699 - (62%) Gaps:52/699 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   585 SLPIYKLRDDLIKAVTDNQILIVIGETGSGKTTQITQYLGECGFTARGKIGCTQPRRVAAMSVAK 649
            :|||.:..:.:::.|..|.::::||||||||:||::|.|...|:|..|.|..||||||||:|||:
plant     3 NLPILQFEEKIVETVEKNSVVVIIGETGSGKSTQLSQILHRHGYTKSGVIAITQPRRVAAVSVAR 67

  Fly   650 RVAEEYGCRLGQEVGYTIRFEDCTSPETIIKYMTDGMLLRECLMEAELKSYSVIMLDEAHERTIH 714
            |||:|....||::|||.|||||.|:.:|.|||:|||:||||.|....|..||||:|||||||:::
plant    68 RVAQELDVPLGEDVGYAIRFEDRTTSKTRIKYLTDGVLLRESLSNPMLDDYSVIILDEAHERSLN 132

  Fly   715 TDVLFGLLKTAVQKR-PELKLIVTSATLDAVKFSQYFFKAPIFTIPGRTFPVEVLYTKEPETDYL 778
            ||:|.||:|..|:.| ...|:::||||||..|.|::|...|:..:||:.:|||:||:||....|:
plant   133 TDILLGLVKRLVRIRASNFKVLITSATLDGEKVSEFFSGCPVLNVPGKLYPVEILYSKERPVSYI 197

  Fly   779 DASLITVMQIHLREPPGDILLFLTGQEEIDTACEILYERMKSLGP-DVPELIILPVYSALPSEMQ 842
            ::||...:.||:|||.||||:|:|||::|:.....|.|:::||.. ...:.||.|::.:||.|||
plant   198 ESSLKVAIDIHVREPEGDILIFMTGQDDIEKLVSRLEEKVRSLAEGSCMDAIIYPLHGSLPPEMQ 262

  Fly   843 TRIFDPAPAGSRKVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQAAAKQ 907
            .|:|.|.|...|:.:::|||||||||:||:.||:|.|:|||:.||..:||.||.|..||:..|.|
plant   263 VRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDSGYVKQRQYNPSSGMFSLDVIQISKVQANQ 327

  Fly   908 RAGRAGRTGPGKTYRLYTERAYRDEMLPTPVPEIQRTNLATTVLQLKTMGIN--DLLHFDFMDAP 970
            ||||||||.|||.||||....|||:.|...:||||||:||.:||.||::.:.  |:|.|||:|||
plant   328 RAGRAGRTRPGKCYRLYPLAVYRDDFLDATIPEIQRTSLAGSVLYLKSLDLPDIDILKFDFLDAP 392

  Fly   971 PVESLVMALEQLHSLSALDDEGLLTRLGRRMAEFPLEPNLSKMLIMSVALQCSDEILTIVSMLSV 1035
            ..|||..||:||:.:.|:|:.|.:||:||.|::.||||:||:.||.:....|..:.||:|:|||.
plant   393 SSESLEDALKQLYFIDAIDENGAITRIGRTMSDLPLEPSLSRTLIEANETGCLSQALTVVAMLSA 457

  Fly  1036 QNVFYRPKDKQALADQKKAKFNQ--------AEGDHLTLLAVYNSWKNNKFSNAWCYENFVQIRT 1092
            :......:.|.:   :||.|.::        ..|||:.||.::.||....:...||.||.:|:|.
plant   458 ETTLLPARSKPS---EKKRKHDEDSNLPNGSGYGDHIQLLQIFESWDRTNYDPVWCKENGMQVRG 519

  Fly  1093 LKRSQDVRKQLLGIM---DRHKLDVVSAGKNSV------RIQKAICSGFFRNAAKKD-PQEGYRT 1147
            :...:|||:||..||   .:.:|:|.:.|:.|.      :::||:|.|.....|::. ...||||
plant   520 MVFVKDVRRQLCQIMQKISKDRLEVGADGRKSSSRDDYRKLRKALCVGNANQIAERMLRHNGYRT 584

  Fly  1148 L-VDSQVVYIHPSSALF----NRQPEWVIYHELVQTTKEYMREVTTIDPKWLVEF---------- 1197
            | ..||:|.:||||.|.    ...|.:|:||||:.||:.:||.|..:|..|:...          
plant   585 LSFQSQLVQVHPSSVLSADNDGMMPNYVVYHELISTTRPFMRNVCAVDMAWVAPIKRKIEKLNVR 649

  Fly  1198 ------APSFFRFSDPTKLSKFKKNQRLEPLYNKYEEPNAWRISRVRRR 1240
                  ||||....:.|:||   ||....|..::..|.   ||...|.|
plant   650 KLSGGPAPSFKVPEEKTELS---KNNAETPAVSENVES---RIEAARER 692

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
peaNP_610928.1 S1_DHX8_helicase 285..363 CDD:240189
HrpA 573..1221 CDD:224557 299/678 (44%)
AT1G27900NP_564296.1 HrpA 3..639 CDD:224557 290/638 (45%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D354219at2759
OrthoFinder 1 1.000 - - FOG0000059
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.820

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