DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pea and MEE29

DIOPT Version :9

Sequence 1:NP_610928.1 Gene:pea / 36561 FlyBaseID:FBgn0086895 Length:1242 Species:Drosophila melanogaster
Sequence 2:NP_181077.3 Gene:MEE29 / 818101 AraportID:AT2G35340 Length:1044 Species:Arabidopsis thaliana


Alignment Length:1206 Identity:460/1206 - (38%)
Similarity:653/1206 - (54%) Gaps:220/1206 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 LGINDKDLAEFIIDLENKNRTYDTFRKALLDNGAEFPDSLVQNLQRIINLMRPSRPGGASQEKTV 88
            ||.:...:.:::|.:..::::.....:.|::.|.    ||..:.:.....:....|     .||.
plant    18 LGFSQTAVVQYLIAMAKQSKSPGELVRELVECGF----SLSGDTRAFAEEIYARAP-----RKTP 73

  Fly    89 G----DKKEDKKSQLLKMFPGLALPNDTYSKKEESDDDEKVKAKPEKHSETHKKTDMSDVDAAMM 149
            |    .::|.:.:.|||       ...|:|..|...|:::...|.:..|:|.|.           
plant    74 GVNLYQQQEAEAAMLLK-------KQKTFSLLEADHDEDENNVKKQSASKTGKS----------- 120

  Fly   150 ELEALAPGEGATLVRPHKEVSSRDRHKRRSRDRDTKRRSRSREDRHSDRRRSRSRDKERRRRSRS 214
                                   |:.::|.|     ::|...|| ..|.......||...||..|
plant   121 -----------------------DKGQKRFR-----KKSEQLED-DDDEVVIVREDKRNVRRKVS 156

  Fly   215 RDNRRRSRSREDRDRDRDRRHKSSSSRDHHERRRRSRSRSTERRDRRDRSRDCSEKMPPPSAAMT 279
            .|....:.|.|:|.||:         |:..|..:..|.|.|.|          :.|:..|..:..
plant   157 EDEDDGTESEEERLRDQ---------REREELEQHLRERDTAR----------TRKLTEPKMSKK 202

  Fly   280 DDPE----AGKIYSGKIANIVPFGCFVQLFGLRKRWEGLVHISQLRAEGRVTDVTEVVTRNQTVK 340
            :..|    ...:..|.|.::..|.           |:                  |.:.:.:..|
plant   203 EQEEFVRRDSAVDKGDIESLRKFS-----------WQ------------------EYMKKRKQKK 238

  Fly   341 VKVMSITGQKVSLSMKEVDQDSGKDLNPLSHAPEDDESLRDRNPDGPFSSSTSMLNLQGNGMEGD 405
            |.                                   .|:|...|.|:             :.||
plant   239 VL-----------------------------------ELKDDIEDEPY-------------LFGD 255

  Fly   406 EHESRKRVTRISSPERWEIKQMISSGVLDRS-----EMPDFDEETGLLPKDEDDEADIEIE---- 461
            |..:.:.:....  .:.||.::|.....:..     .|||..::.|.:  |::....:.::    
plant   256 EKLTEREIREFR--YKREIYELIKKSTQEEDNVGEYRMPDAYDQQGSV--DQEKRFAVSVQRYRD 316

  Fly   462 --IVEEEPPFLSGHGRALHDLSPVRIVKNPDGSLAQAAMMQSALSKERREQKMLQREQEIEAMPT 524
              ..|:..||........|.:.             .||:...|.:||..:......|.:|:.:..
plant   317 MGSAEKMNPFAEQEAWEDHQIE-------------NAALKFGAKNKEVSDNYEFVFEDQIDFIKA 368

  Fly   525 SL--NKNWIDPLPEDESRSLAANMRGMAAAPPEVPEWKKHVIGGKKSSFGKKTDLTLVEQRQSLP 587
            |:  ..|:     |||          |.|.|             .:.|.||.....|.|.|::||
plant   369 SVLAGDNY-----EDE----------MHAKP-------------SQDSAGKSAFHMLQEDRKALP 405

  Fly   588 IYKLRDDLIKAVTDNQILIVIGETGSGKTTQITQYLGECGFTARGKIGCTQPRRVAAMSVAKRVA 652
            ||..||.|:.||.|:|:||::|||||||||||.|||.|.|:|..||:||||||||||||||.|||
plant   406 IYTYRDQLLNAVKDHQVLIIVGETGSGKTTQIPQYLHEAGYTKLGKVGCTQPRRVAAMSVAARVA 470

  Fly   653 EEYGCRLGQEVGYTIRFEDCTSPETIIKYMTDGMLLRECLMEAELKSYSVIMLDEAHERTIHTDV 717
            :|.|.:||.||||:||||||||.:||:|||||||||||.|.|.:|.|||||::|||||||:.||:
plant   471 QEMGGKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLRELLGEPDLGSYSVIIVDEAHERTLRTDI 535

  Fly   718 LFGLLKTAVQKRPELKLIVTSATLDAVKFSQYFFKAPIFTIPGRTFPVEVLYTKEPETDYLDASL 782
            ||||:|...:.||:|||:::|||:||.|||.:|.:||||..|||.:||::.:|..||.||:||::
plant   536 LFGLVKDIARARPDLKLLISSATMDAEKFSDFFDQAPIFRFPGRRYPVDICFTTAPEADYMDAAI 600

  Fly   783 ITVMQIHLREPPGDILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFD 847
            .||:.||::||.||:|:||.|||||:...|.|..:::.||..:.||||.|:|:.||||:|.:||:
plant   601 TTVLTIHVKEPLGDVLVFLPGQEEIEAVEENLKHKIRGLGTKIRELIICPIYANLPSELQAKIFE 665

  Fly   848 PAPAGSRKVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQAAAKQRAGRA 912
            |.|.|:||||:||||||||||||||.|||||||.|.|.||.:|||:||:|||||:|:|.||.|||
plant   666 PTPEGARKVVLATNIAETSLTIDGIKYVVDPGFSKMKSYNPRTGMESLLVTPISKASATQRTGRA 730

  Fly   913 GRTGPGKTYRLYTERAYRDEMLPTPVPEIQRTNLATTVLQLKTMGINDLLHFDFMDAPPVESLVM 977
            |||.|||.|||||...|.:::....||||||||||:.||.||::||::||:|||||.||.|:|:.
plant   731 GRTSPGKCYRLYTAFNYYNDLEDNTVPEIQRTNLASVVLSLKSLGIHNLLNFDFMDPPPSEALIK 795

  Fly   978 ALEQLHSLSALDDEGLLTRLGRRMAEFPLEPNLSKMLIMSVALQCSDEILTIVSMLSV-QNVFYR 1041
            :||.|.:|.||:..|.||:.|||||||||:|.||||:::|...:|||||::|.:|||: .::|||
plant   796 SLELLFALGALNQLGELTKAGRRMAEFPLDPMLSKMIVVSDKYKCSDEIISIAAMLSIGPSIFYR 860

  Fly  1042 PKDKQALADQKKAKFNQAE-GDHLTLLAVYNSWKNNKFSNAWCYENFVQIRTLKRSQDVRKQLLG 1105
            |||||..||.....|:... |||:..|.:|||||...:|..|||||::|:|::||::|:|.||.|
plant   861 PKDKQVHADNAMKNFHVGNVGDHIAFLKIYNSWKETNYSTQWCYENYIQVRSMKRARDIRDQLEG 925

  Fly  1106 IMDRHKLDVVSAGKNSVRIQKAICSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWV 1170
            :::|.::||.|.......|:|:|.:|||.:.||......|||:...|.|:|||:|.|....|.||
plant   926 LLERVEIDVSSNANELDSIRKSIVAGFFPHTAKLQKNGSYRTVKHPQTVHIHPASGLSQVLPRWV 990

  Fly  1171 IYHELVQTTKEYMREVTTIDPKWLVEFAPSFFRFSD 1206
            :||:||.|:|||||:||.:.|:||:|.||.:::..|
plant   991 VYHQLVLTSKEYMRQVTELKPEWLIEIAPHYYQLKD 1026

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
peaNP_610928.1 S1_DHX8_helicase 285..363 CDD:240189 7/77 (9%)
HrpA 573..1221 CDD:224557 367/636 (58%)
MEE29NP_181077.3 DEXDc 399..574 CDD:214692 118/174 (68%)
DEXDc 421..559 CDD:238005 97/137 (71%)
Helicase_C 597..732 CDD:278689 84/134 (63%)
HA2 802..887 CDD:214852 44/84 (52%)
OB_NTP_bind 911..1021 CDD:285018 51/109 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53574
OrthoDB 1 1.010 - - D354219at2759
OrthoFinder 1 1.000 - - FOG0000059
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100085
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X141
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.730

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